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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(CDMConnector) > > test_check("CDMConnector") trying URL 'https://example-data.ohdsi.dev/GiBleed.zip' Content type 'application/zip' length 6754786 bytes (6.4 MB) ================================================== downloaded 6.4 MB Download completed! Creating CDM database D:\temp\RtmpUlipMT\file23f001af363a6/GiBleed_5.3.zip [ FAIL 0 | WARN 0 | SKIP 99 | PASS 192 ] ══ Skipped tests (99) ══════════════════════════════════════════════════════════ • Capr cannot be loaded (1): 'test-db-generateCohortSet.R:158:3' • CirceR cannot be loaded (14): 'test-db-generateCohortSet.R:71:5', 'test-db-generateCohortSet.R:71:5', 'test-db-generateCohortSet.R:71:5', 'test-db-generateCohortSet.R:71:5', 'test-db-generateCohortSet.R:71:5', 'test-db-generateCohortSet.R:71:5', 'test-db-generateCohortSet.R:84:3', 'test-db-generateConceptCohortSet.R:162:5', 'test-db-generateConceptCohortSet.R:162:5', 'test-db-generateConceptCohortSet.R:162:5', 'test-db-generateConceptCohortSet.R:162:5', 'test-db-generateConceptCohortSet.R:162:5', 'test-db-generateConceptCohortSet.R:162:5', 'test-db-recordCohortAttrition.R:132:3' • TreatmentPatterns cannot be loaded (1): 'test-db-generateCohortSet.R:208:3' • any(write_schema == "") is TRUE (5): 'test-db-dateadd.R:108:5', 'test-db-dateadd.R:108:5', 'test-db-dateadd.R:108:5', 'test-db-dateadd.R:108:5', 'test-db-dateadd.R:108:5' • any(write_schema == "") || any(cdm_schema == "") || is.null(con) is TRUE (39): 'test-db-DBI.R:87:5', 'test-db-DBI.R:87:5', 'test-db-DBI.R:87:5', 'test-db-DBI.R:87:5', 'test-db-DBI.R:87:5', 'test-db-casing.R:32:5', 'test-db-casing.R:32:5', 'test-db-casing.R:32:5', 'test-db-casing.R:32:5', 'test-db-casing.R:32:5', 'test-db-cdm.R:46:5', 'test-db-cdm.R:46:5', 'test-db-cdm.R:46:5', 'test-db-cdm.R:46:5', 'test-db-cdm.R:46:5', 'test-db-compute.R:84:5', 'test-db-compute.R:84:5', 'test-db-compute.R:84:5', 'test-db-compute.R:84:5', 'test-db-compute.R:84:5', 'test-db-example-analysis.R:206:5', 'test-db-example-analysis.R:206:5', 'test-db-example-analysis.R:206:5', 'test-db-example-analysis.R:206:5', 'test-db-newGeneratedCohortSet.R:94:5', 'test-db-newGeneratedCohortSet.R:94:5', 'test-db-newGeneratedCohortSet.R:94:5', 'test-db-newGeneratedCohortSet.R:94:5', 'test-db-newGeneratedCohortSet.R:94:5', 'test-db-recordCohortAttrition.R:125:5', 'test-db-recordCohortAttrition.R:125:5', 'test-db-recordCohortAttrition.R:125:5', 'test-db-recordCohortAttrition.R:125:5', 'test-db-recordCohortAttrition.R:125:5', 'test-db-utils.R:69:5', 'test-db-utils.R:69:5', 'test-db-utils.R:69:5', 'test-db-utils.R:69:5', 'test-db-utils.R:69:5' • any(write_schema == "") || is.null(con) is TRUE (25): 'test-db-cohortTransformations.R:267:5', 'test-db-cohortTransformations.R:267:5', 'test-db-cohortTransformations.R:267:5', 'test-db-cohortTransformations.R:267:5', 'test-db-cohortTransformations.R:267:5', 'test-db-cohort_ddl.R:35:5', 'test-db-cohort_ddl.R:35:5', 'test-db-cohort_ddl.R:35:5', 'test-db-cohort_ddl.R:35:5', 'test-db-cohort_ddl.R:35:5', 'test-db-copy_cdm_to.R:32:5', 'test-db-copy_cdm_to.R:32:5', 'test-db-copy_cdm_to.R:32:5', 'test-db-copy_cdm_to.R:32:5', 'test-db-copy_cdm_to.R:32:5', 'test-db-summariseQuantile.R:62:5', 'test-db-summariseQuantile.R:62:5', 'test-db-summariseQuantile.R:62:5', 'test-db-summariseQuantile.R:62:5', 'test-db-summariseQuantile.R:62:5', 'test-db-verify_write_schema.R:20:5', 'test-db-verify_write_schema.R:20:5', 'test-db-verify_write_schema.R:20:5', 'test-db-verify_write_schema.R:20:5', 'test-db-verify_write_schema.R:20:5' • failing test (4): 'test-db-dateadd.R:125:3', 'test-db-temp-tables.R:47:5', 'test-db-temp-tables.R:47:5', 'test-db-temp-tables.R:47:5' • get_write_schema(dbtype) == "" is TRUE (2): 'test-db-temp-tables.R:48:5', 'test-db-temp-tables.R:48:5' • manual test (3): 'test-Eunomia.R:2:3', 'test-db-copy_cdm_to.R:62:3', 'test-db-generateCohortSet.R:190:3' • write_schema == "" is TRUE (5): 'test-zzz-DBI.R:58:5', 'test-zzz-DBI.R:58:5', 'test-zzz-DBI.R:58:5', 'test-zzz-DBI.R:58:5', 'test-zzz-DBI.R:58:5' [ FAIL 0 | WARN 0 | SKIP 99 | PASS 192 ] Warning messages: 1: Connection is garbage-collected, use dbDisconnect() to avoid this. 2: Database is garbage-collected, use dbDisconnect(con, shutdown=TRUE) or duckdb::duckdb_shutdown(drv) to avoid this. 3: Connection is garbage-collected, use dbDisconnect() to avoid this. 4: Database is garbage-collected, use dbDisconnect(con, shutdown=TRUE) or duckdb::duckdb_shutdown(drv) to avoid this. 5: Database is garbage-collected, use dbDisconnect(con, shutdown=TRUE) or duckdb::duckdb_shutdown(drv) to avoid this. > > > > > > proc.time() user system elapsed 35.98 7.18 43.87