downloading reverse dependencies ... downloading bmstdr_0.7.9.tar.gz ... ok installing dependencies ‘CARBayes’, ‘CARBayesdata’, ‘CARBayesST’, ‘INLA’, ‘inlabru’, ‘spBayes’, ‘spTDyn’, ‘spTimer’ Warning: package ‘INLA’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages begin installing package ‘CARBayesdata’ begin installing package ‘spTimer’ begin installing package ‘spBayes’ begin installing package ‘inlabru’ * installing *source* package ‘CARBayesdata’ ... ** package ‘CARBayesdata’ successfully unpacked and MD5 sums checked ** using staged installation ** data ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CARBayesdata) begin installing package ‘CARBayes’ begin installing package ‘CARBayesST’ * installing *source* package ‘spTimer’ ... ** package ‘spTimer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp708j3M/R.INSTALL34baaf2e4a05c/spTimer/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covariance.c -o covariance.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c equation_xb_ar.c -o equation_xb_ar.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c equation_xb_gp.c -o equation_xb_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c equation_xb_gpp.c -o equation_xb_gpp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forecast_xb_ar.c -o forecast_xb_ar.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forecast_xb_gp.c -o forecast_xb_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forecast_xb_gpp.c -o forecast_xb_gpp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gibbs_ar.c -o gibbs_ar.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gibbs_gp.c -o gibbs_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gibbs_gpp.c -o gibbs_gpp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mathematics.c -o mathematics.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prediction_xb_ar.c -o prediction_xb_ar.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prediction_xb_gp.c -o prediction_xb_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prediction_xb_gpp.c -o prediction_xb_gpp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randgenerator.c -o randgenerator.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spTimer_init.c -o spTimer_init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o spTimer.so common.o covariance.o equation_xb_ar.o equation_xb_gp.o equation_xb_gpp.o forecast_xb_ar.o forecast_xb_gp.o forecast_xb_gpp.o gibbs_ar.o gibbs_gp.o gibbs_gpp.o mathematics.o prediction_xb_ar.o prediction_xb_gp.o prediction_xb_gpp.o randgenerator.o spTimer_init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp708j3M/R.INSTALL34baaf2e4a05c/spTimer/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-spTimer/00new/spTimer/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spTimer) begin installing package ‘spTDyn’ * installing *source* package ‘inlabru’ ... ** package ‘inlabru’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (inlabru) * installing *source* package ‘spTDyn’ ... ** package ‘spTDyn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmppu41Rk/R.INSTALL34bbf15ce109ba/spTDyn/src' gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c common.c -o common.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covariance.c -o covariance.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c equation_xb_gp.c -o equation_xb_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c forecast_xb_gp.c -o forecast_xb_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gibbs_gp.c -o gibbs_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mathematics.c -o mathematics.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c prediction_xb_gp.c -o prediction_xb_gp.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c randgenerator.c -o randgenerator.o gcc-13 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c spTDyn_init.c -o spTDyn_init.o gcc-13 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o spTDyn.so common.o covariance.o equation_xb_gp.o forecast_xb_gp.o gibbs_gp.o mathematics.o prediction_xb_gp.o randgenerator.o spTDyn_init.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmppu41Rk/R.INSTALL34bbf15ce109ba/spTDyn/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-spTDyn/00new/spTDyn/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spTDyn) * installing *source* package ‘spBayes’ ... ** package ‘spBayes’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpyzyCK9/R.INSTALL34bab01c52c7d6/spBayes/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c adaptMetropGibbs.cpp -o adaptMetropGibbs.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c idist.cpp -o idist.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mkSpCov.cpp -o mkSpCov.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c nonSpGLM_AMCMC.cpp -o nonSpGLM_AMCMC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c ptsInPoly.cpp -o ptsInPoly.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spDynLM.cpp -o spDynLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spGLM.cpp -o spGLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spGLM_AMCMC.cpp -o spGLM_AMCMC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spLM.cpp -o spLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spLMPredict.cpp -o spLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spLMRecover.cpp -o spLMRecover.o spLMRecover.cpp: In function ‘SEXPREC* spLMRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spLMRecover.cpp:187:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 187 | mvrnorm(&REAL(betaSamples_r)[s*p], bb, B, p, false); | ~~~~^~~~~~~~~~~~~~~ spLMRecover.cpp:82:10: note: ‘betaSamples_r’ was declared here 82 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spLMRecover.cpp:237:17: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 237 | REAL(wSamples_r)[s*n+k] = vU[k] + vU[n+k]; | ~~~~^~~~~~~~~~~~ spLMRecover.cpp:82:25: note: ‘wSamples_r’ was declared here 82 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMPPMvDIC.cpp -o spMPPMvDIC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMisalign.cpp -o spMisalign.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMisalignGLM.cpp -o spMisalignGLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMisalignGLMPredict.cpp -o spMisalignGLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMisalignPredict.cpp -o spMisalignPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMisalignRecover.cpp -o spMisalignRecover.o spMisalignRecover.cpp: In function ‘SEXPREC* spMisalignRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spMisalignRecover.cpp:241:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 241 | mvrnorm(&REAL(betaSamples_r)[s*P], bb, B, P, false); | ~~~~^~~~~~~~~~~~~~~ spMisalignRecover.cpp:102:10: note: ‘betaSamples_r’ was declared here 102 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spMisalignRecover.cpp:298:24: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 298 | mvrnorm(&REAL(wSamples_r)[s*N], vU, C, N, false); | ~~~~^~~~~~~~~~~~ spMisalignRecover.cpp:102:25: note: ‘wSamples_r’ was declared here 102 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMvGLM.cpp -o spMvGLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMvGLMPredict.cpp -o spMvGLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMvGLM_AMCMC.cpp -o spMvGLM_AMCMC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMvLM.cpp -o spMvLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMvLMPredict.cpp -o spMvLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spMvLMRecover.cpp -o spMvLMRecover.o spMvLMRecover.cpp: In function ‘SEXPREC* spMvLMRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spMvLMRecover.cpp:258:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 258 | mvrnorm(&REAL(betaSamples_r)[s*p], bb, B, p, false); | ~~~~^~~~~~~~~~~~~~~ spMvLMRecover.cpp:107:10: note: ‘betaSamples_r’ was declared here 107 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spMvLMRecover.cpp:366:17: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 366 | REAL(wSamples_r)[s*nm+k] = vU[nm+k] + vU[k]; | ~~~~^~~~~~~~~~~~ spMvLMRecover.cpp:107:25: note: ‘wSamples_r’ was declared here 107 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPDynLM.cpp -o spPPDynLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPGLM.cpp -o spPPGLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPGLM_AMCMC.cpp -o spPPGLM_AMCMC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPLM.cpp -o spPPLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPLMPredict.cpp -o spPPLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPLMRecover.cpp -o spPPLMRecover.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPMvGLM.cpp -o spPPMvGLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPMvGLMPredict.cpp -o spPPMvGLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPMvGLM_AMCMC.cpp -o spPPMvGLM_AMCMC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPMvLM.cpp -o spPPMvLM.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPMvLMPredict.cpp -o spPPMvLMPredict.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spPPMvLMRecover.cpp -o spPPMvLMRecover.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spSVC.cpp -o spSVC.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spSVCPredictJoint.cpp -o spSVCPredictJoint.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spSVCPredictMarg.cpp -o spSVCPredictMarg.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c spSVCRecover.cpp -o spSVCRecover.o spSVCRecover.cpp: In function ‘SEXPREC* spSVCRecover(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: spSVCRecover.cpp:290:20: warning: ‘betaSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 290 | mvrnorm(&REAL(betaSamples_r)[s*p], bb, B, p, false); | ~~~~^~~~~~~~~~~~~~~ spSVCRecover.cpp:95:10: note: ‘betaSamples_r’ was declared here 95 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~~~~ spSVCRecover.cpp:332:24: warning: ‘wSamples_r’ may be used uninitialized [-Wmaybe-uninitialized] 332 | mvrnorm(&REAL(wSamples_r)[s*nm], tmp_nm2, K, nm, false); | ~~~~^~~~~~~~~~~~ spSVCRecover.cpp:95:25: note: ‘wSamples_r’ was declared here 95 | SEXP betaSamples_r, wSamples_r; | ^~~~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c util.cpp -o util.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o spBayes.so adaptMetropGibbs.o idist.o init.o mkSpCov.o nonSpGLM_AMCMC.o ptsInPoly.o spDynLM.o spGLM.o spGLM_AMCMC.o spLM.o spLMPredict.o spLMRecover.o spMPPMvDIC.o spMisalign.o spMisalignGLM.o spMisalignGLMPredict.o spMisalignPredict.o spMisalignRecover.o spMvGLM.o spMvGLMPredict.o spMvGLM_AMCMC.o spMvLM.o spMvLMPredict.o spMvLMRecover.o spPPDynLM.o spPPGLM.o spPPGLM_AMCMC.o spPPLM.o spPPLMPredict.o spPPLMRecover.o spPPMvGLM.o spPPMvGLMPredict.o spPPMvGLM_AMCMC.o spPPMvLM.o spPPMvLMPredict.o spPPMvLMRecover.o spSVC.o spSVCPredictJoint.o spSVCPredictMarg.o spSVCRecover.o util.o -llapack -L/home/hornik/tmp/R-d-gcc-13/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpyzyCK9/R.INSTALL34bab01c52c7d6/spBayes/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-spBayes/00new/spBayes/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (spBayes) * installing *source* package ‘CARBayes’ ... ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpCLlZUL/R.INSTALL34bb0f3766ddba/CARBayes/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CARBayes.cpp -o CARBayes.o g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o CARBayes.so CARBayes.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpCLlZUL/R.INSTALL34bb0f3766ddba/CARBayes/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-CARBayes/00new/CARBayes/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CARBayes) * installing *source* package ‘CARBayesST’ ... ** package ‘CARBayesST’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-13 (Debian 13.2.0-13) 13.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpVuMtKh/R.INSTALL34bb1165a3a382/CARBayesST/src' g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c CARBayesST.cpp -o CARBayesST.o CARBayesST.cpp: In function ‘Rcpp::List SPTICARphiVarb(Rcpp::NumericMatrix, int, int, Rcpp::NumericVector, Rcpp::NumericVector, double, Rcpp::NumericVector, Rcpp::NumericVector, double, double, Rcpp::NumericVector)’: CARBayesST.cpp:4526:41: warning: ‘priormean’ may be used uninitialized [-Wmaybe-uninitialized] 4526 | oldpriorbit = (0.5/priorvar) * pow(phiVarb[n] - priormean, 2); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ CARBayesST.cpp:4473:25: note: ‘priormean’ was declared here 4473 | double priorvardenom, priormean; | ^~~~~~~~~ CARBayesST.cpp:4524:26: warning: ‘priorvar’ may be used uninitialized [-Wmaybe-uninitialized] 4524 | propphiVarb = rnorm(1, phiVarb[n], sqrt(priorvar*phiVarb_tune))[0]; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CARBayesST.cpp:4474:10: note: ‘priorvar’ was declared here 4474 | double priorvar; | ^~~~~~~~ CARBayesST.cpp: In function ‘Rcpp::List SPTICARphiGaussian(Rcpp::NumericMatrix, int, int, Rcpp::NumericVector, Rcpp::NumericVector, double, double, Rcpp::NumericVector, double, Rcpp::NumericVector)’: CARBayesST.cpp:4181:32: warning: ‘priormean’ may be used uninitialized [-Wmaybe-uninitialized] 4181 | meanFullCon = ((priormean/priorvar) + (y[n] - XB[n])/lik_var)*varFullCon; | ~~~~~~~~~~^~~~~~~~~~ CARBayesST.cpp:4132:10: note: ‘priormean’ was declared here 4132 | double priormean; | ^~~~~~~~~ CARBayesST.cpp:4181:32: warning: ‘priorvar’ may be used uninitialized [-Wmaybe-uninitialized] 4181 | meanFullCon = ((priormean/priorvar) + (y[n] - XB[n])/lik_var)*varFullCon; | ~~~~~~~~~~^~~~~~~~~~ CARBayesST.cpp:4133:10: note: ‘priorvar’ was declared here 4133 | double priorvar; | ^~~~~~~~ CARBayesST.cpp: In function ‘Rcpp::List SPTICARphiBinomial(Rcpp::NumericMatrix, int, int, Rcpp::NumericVector, Rcpp::NumericVector, double, Rcpp::NumericVector, double, Rcpp::NumericVector, double, Rcpp::NumericVector)’: CARBayesST.cpp:4431:101: warning: ‘priormean’ may be used uninitialized [-Wmaybe-uninitialized] 4431 | l_prob_old = -y[n]*log(theta) + (trials[n] - y[n])*log(1 - (1/theta)) - (0.5/priorvar) * pow(phiVarb[n] - priormean, 2); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ CARBayesST.cpp:4377:10: note: ‘priormean’ was declared here 4377 | double priormean; | ^~~~~~~~~ CARBayesST.cpp:4428:27: warning: ‘priorvar’ may be used uninitialized [-Wmaybe-uninitialized] 4428 | phi_new = rnorm(1, phiVarb[n], sqrt(priorvar*phiVarb_tune))[0]; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CARBayesST.cpp:4378:10: note: ‘priorvar’ was declared here 4378 | double priorvar; | ^~~~~~~~ g++-13 -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-13/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.4/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-13/lib -Wl,-O1 -o CARBayesST.so CARBayesST.o RcppExports.o -L/home/hornik/tmp/R-d-gcc-13/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpVuMtKh/R.INSTALL34bb1165a3a382/CARBayesST/src' installing to /home/hornik/tmp/CRAN/Library/00LOCK-CARBayesST/00new/CARBayesST/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (CARBayesST) checking CARBayes_6.1.1.tar.gz ... checking bmstdr_0.7.9.tar.gz ... Depends: Package: CARBayes Depends: MASS, R (>= 3.5.0), Rcpp (>= 0.11.5) Imports: CARBayesdata, coda, dplyr, GGally, glmnet, igraph, mapview, MCMCpack, parallel, RColorBrewer, sf, spam, spdep, stats, truncnorm, utils LinkingTo: Rcpp Timings: user system elapsed CARBayes 247.486 14.126 262.575 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 0 Check results summary: CARBayes ... OK rdepends_bmstdr ... NOTE * checking package dependencies ... NOTE * checking for GNU extensions in Makefiles ... NOTE