* using log directory ‘/srv/hornik/tmp/CRAN_pretest/CADF.Rcheck’ * using R Under development (unstable) (2024-10-01 r87205) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (9) Debian flang-new version 18.1.8 (9) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘CADF/DESCRIPTION’ ... OK * this is package ‘CADF’ version ‘0.1’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/6s] NOTE Maintainer: ‘Steven Ludwig ’ New submission Possibly misspelled words in DESCRIPTION: CADF (3:43) No Authors@R field in DESCRIPTION. Please add one, modifying Authors@R: c(person(family = "person)", role = "aut", comment = "\"aut\", \"cre\""), person(given = "Steven", family = "Ludwig", role = "cre", email = "steven.ludwig@u.northwestern.edu")) as necessary. Author field should be Authors@R. Current value is: person("Ludwig", "Steven", email = "steven.ludwig@u.northwestern.edu", role = c("aut", "cre")) Found the following (possibly) invalid URLs: URL: https://1drv.ms/b/s!AsKU-g_cimuplJs-7pC9L92zLG5H-w?e=eKJM3c (moved to https://onedrive.live.com/redir?resid=A96B8ADC0FFA94C2!331198&authkey=!AO6QvS_dsyxuR_s&ithint=file%2cpdf&e=eKJM3c) From: inst/doc/my-vignette.html README.md Status: 301 Message: Moved Permanently For content that is 'Moved Permanently', please change http to https, add trailing slashes, or replace the old by the new URL. Found the following (possibly) invalid file URI: URI: data_blah.com From: man/data-name.Rd Size of tarball: 5687181 bytes * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... WARNING Found the following files with non-portable file names: R/bass/Bass Model R Code.r copy cadf package.sh data/ROLLUP diagnostic.csv.xz These are not fully portable file names. See section ‘Package structure’ in the ‘Writing R Extensions’ manual. * checking for sufficient/correct file permissions ... OK * checking whether package ‘CADF’ can be installed ... [13s/13s] OK * used C++ compiler: ‘Debian clang version 18.1.8 (11)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE 'LinkingTo' for ‘R6’ ‘stats’ ‘BTYD’ are unused as they have no 'include' directory * checking top-level files ... NOTE File LICENSE is not mentioned in the DESCRIPTION file. Non-standard files/directories found at top level: ‘CA.json’ ‘CDNOW_master.csv’ ‘CDNOW_master.txt’ ‘CDNOW_master.xlsx’ ‘Customer.Rd’ ‘README.html’ ‘backup.Rmd’ ‘btyd_3_1_datapreparation.R’ ‘copy cadf package.sh’ ‘figure’ ‘generate_CADF_sample.R’ ‘output-out.txt’ ‘output.txt’ ‘package_management.R’ ‘retention.cpp’ * checking for left-over files ... NOTE The following files look like leftovers: ‘CADF/Customer.Rd’ Please remove them from your package. * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING '::' or ':::' import not declared from: ‘lubridate’ 'library' or 'require' call not declared from: ‘markovchain’ 'library' or 'require' call to ‘markovchain’ in package code. Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] NOTE CADF_to_annualhalfing_data: no visible binding for global variable ‘cadf.data’ CADF_to_annualhalfing_data : : no visible global function definition for ‘tail’ CADF_to_btyd_pareto_nbd : : no visible global function definition for ‘tail’ CADF_to_migration_model: no visible global function definition for ‘markovchainFit’ annualhalfingmodel : : no visible global function definition for ‘tail’ annualhalfingmodel: no visible global function definition for ‘optim’ ca_SRM_time_varying: no visible global function definition for ‘relevel’ ca_SRM_time_varying: no visible global function definition for ‘glm’ create.recency.string: no visible global function definition for ‘ave’ f_intMonths: no visible global function definition for ‘interval’ modeling.LL.gamma_spend: no visible binding for global variable ‘data’ runCompleteFile: no visible binding for global variable ‘runProfileforID’ Undefined global functions or variables: ave cadf.data data glm interval markovchainFit optim relevel runProfileforID tail Consider adding importFrom("stats", "ave", "glm", "optim", "relevel") importFrom("utils", "data", "tail") to your NAMESPACE file. * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... WARNING Undocumented code objects: ‘CADF_to_annualhalfing_data’ ‘CADF_to_btyd_pareto_nbd’ ‘CADF_to_logistic_regression’ ‘ROLLUP diagnostic’ ‘bass.answeringmachines’ ‘billionaire’ ‘cadf.data.sample’ ‘discretechoice’ ‘exceldata’ ‘fp’ ‘frequency_by_T’ ‘frequency_from_ps’ ‘frequency_from_rle’ ‘gammagamma’ ‘ltv.transactions’ ‘modeling.LL.gamma_spend’ ‘modeling.annualhalfing.likelihood’ ‘pdf_gamma’ ‘pdf_gamma2’ ‘print.glossary’ ‘segltv’ ‘split.transaction.file_to_CADF’ ‘srm_data’ ‘srm_summaries’ ‘stocks’ ‘transactions’ ‘transactions.merged’ Undocumented data sets: ‘ROLLUP diagnostic’ ‘bass.answeringmachines’ ‘cadf.data.sample’ ‘discretechoice’ ‘exceldata’ ‘fp’ ‘gammagamma’ ‘billionaire’ ‘ltv.transactions’ ‘segltv’ ‘srm_data’ ‘srm_summaries’ ‘stocks’ ‘transactions’ ‘transactions.merged’ All user-level objects in a package should have documentation entries. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'CADF_to_migration_model.Rd' ‘cadf.data’ Documented arguments not in \usage in Rd file 'CADF_to_migration_model.Rd': ‘cadf_data’ Undocumented arguments in Rd file 'CADF_to_nth_purchase.Rd' ‘cadf.data’ Documented arguments not in \usage in Rd file 'CADF_to_nth_purchase.Rd': ‘cadf_data’ Undocumented arguments in Rd file 'CADF_to_nth_purchase_allrows.Rd' ‘cadf.data’ Documented arguments not in \usage in Rd file 'CADF_to_nth_purchase_allrows.Rd': ‘cadf_data’ Undocumented arguments in Rd file 'annualhalfing_LL.Rd' ‘grid’ ‘dta’ Undocumented arguments in Rd file 'annualhalfingmodel.Rd' ‘cadf.data’ ‘starting.values’ Undocumented arguments in Rd file 'bigT_expand_via_apply.Rd' ‘x’ Undocumented arguments in Rd file 'ca_SRM.Rd' ‘df_logistic’ Undocumented arguments in Rd file 'create.purchase.string.Rd' ‘date.column’ ‘return.mode’ Documented arguments not in \usage in Rd file 'create.purchase.string.Rd': ‘date.column.’ Undocumented arguments in Rd file 'create.recency.string.Rd' ‘x’ Undocumented arguments in Rd file 'f_CustomerModelingMatrix.Rd' ‘T’ Undocumented arguments in Rd file 'f_CustomerSurvivalModelingMatrix.Rd' ‘T’ Undocumented arguments in Rd file 'f_intMonths.Rd' ‘a’ ‘b’ Undocumented arguments in Rd file 'id_to_CADF.Rd' ‘data’ ‘today.study.cutoff’ Undocumented arguments in Rd file 'psmatrix_to_psstring.Rd' ‘psmatrix’ Undocumented arguments in Rd file 'psmatrix_to_recency_attimeof_matrix.Rd' ‘psmatrix’ Undocumented arguments in Rd file 'qc_purchase_string.Rd' ‘ps’ Undocumented arguments in Rd file 'recency_from_rle.Rd' ‘x’ Undocumented arguments in Rd file 'simple_migration.Rd' ‘n.periods’ Undocumented arguments in Rd file 'transitions.Rd' ‘buyvar’ Documented arguments not in \usage in Rd file 'transitions.Rd': ‘byvar’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... NOTE Argument items with no description in Rd file 'CADF_to_nth_purchase.Rd': ‘n’ Argument items with no description in Rd file 'CADF_to_nth_purchase_allrows.Rd': ‘n’ * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [2s/2s] WARNING Warning: found non-ASCII string 'So Tom and Princip' in object 'fp' * checking LazyData ... WARNING LazyData DB of 11.8 MB without LazyDataCompression set See §1.1.6 of 'Writing R Extensions' * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘CADF-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: CADF_to_migration_model > ### Title: CADF_to_migration_model converts CADF data to migration model > ### data > ### Aliases: CADF_to_migration_model > > ### ** Examples > > load("data/cadf.sample.data.rda") Warning in readChar(con, 5L, useBytes = TRUE) : cannot open compressed file 'data/cadf.sample.data.rda', probable reason 'No such file or directory' Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection Calls: load -> readChar Execution halted * checking for unstated dependencies in vignettes ... NOTE 'library' or 'require' call not declared from: ‘survival’ * checking package vignettes ... OK * checking re-building of vignette outputs ... [1s/1s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘my-vignette.Rmd’ using rmarkdown Quitting from lines 21-23 [setup] (my-vignette.Rmd) Error: processing vignette 'my-vignette.Rmd' failed with diagnostics: there is no package called 'survival' --- failed re-building ‘my-vignette.Rmd’ SUMMARY: processing the following file failed: ‘my-vignette.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 6 WARNINGs, 7 NOTEs