* using log directory 'd:/RCompile/CRANincoming/R-devel/BulkQC.Rcheck'
* using R Under development (unstable) (2023-08-07 r84900 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 12.2.0
    GNU Fortran (GCC) 12.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'BulkQC/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'BulkQC' version '0.1'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... NOTE
Maintainer: 'Sawyer Welden <swelden@wakehealth.edu>'

New submission

Non-FOSS package license (use_gpl_license())

Possibly misspelled words in DESCRIPTION:
  Multisite (3:28)
  multisite (8:35)

Found the following (possibly) invalid file URI:
  URI: motrpac.org
    From: inst/doc/BulkQCVignette.html
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'BulkQC' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... WARNING
Non-standard license specification:
  use_gpl_license()
Standardizable: FALSE
Package listed in more than one of Depends, Imports, Suggests, Enhances:
  'stats'
A package should be listed in only one of these fields.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'::' or ':::' import not declared from: 'tidyr'
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
individual_multivariate_outliers: no visible global function definition
  for 'rename'
individual_multivariate_outliers: no visible global function definition
  for '%>%'
individual_multivariate_outliers: no visible global function definition
  for 'select'
individual_multivariate_outliers: no visible binding for global
  variable 'site'
individual_multivariate_outliers: no visible global function definition
  for 'isolation.forest'
individual_multivariate_outliers: no visible global function definition
  for 'predict'
individual_multivariate_outliers: no visible global function definition
  for 'head'
individual_multivariate_outliers: no visible global function definition
  for 'desc'
individual_multivariate_outliers: no visible binding for global
  variable 'score'
individual_univariate_outliers: no visible global function definition
  for 'rename'
individual_univariate_outliers: no visible global function definition
  for 'select'
individual_univariate_outliers: no visible global function definition
  for 'where'
individual_univariate_outliers: no visible global function definition
  for 'IQR'
individual_univariate_outliers: no visible global function definition
  for 'desc'
individual_univariate_outliers: no visible global function definition
  for 'head'
multisiteQC : selec_valid : <anonymous>: no visible global function
  definition for 'select_if'
multisiteQC: no visible global function definition for 'select'
multisiteQC: no visible global function definition for 'any_of'
multisiteQC: no visible global function definition for 'all_of'
multisiteQC: no visible global function definition for 'select_if'
multisiteQC: no visible global function definition for 'aov'
multisiteQC: no visible global function definition for 'mutate'
multisiteQC: no visible binding for global variable 'anova_1'
multisiteQC: no visible binding for global variable 'anova_2'
multisiteQC: no visible binding for global variable 'reference'
multisiteQC: no visible global function definition for 'sd'
multisiteQC: no visible global function definition for 't.test'
multisiteQC: no visible binding for global variable 'pval'
multisiteQC: no visible binding for global variable 'stddiff'
multisiteQC: no visible binding for global variable 'meaningful'
multisiteQC: no visible global function definition for 'arrange'
multisiteQC: no visible binding for global variable 'Table'
multisiteQC: no visible global function definition for 'desc'
prefilter : <anonymous>: no visible global function definition for
  'select_if'
Undefined global functions or variables:
  %>% IQR Table all_of anova_1 anova_2 any_of aov arrange desc head
  isolation.forest meaningful mutate predict pval reference rename
  score sd select select_if site stddiff t.test where
Consider adding
  importFrom("stats", "IQR", "aov", "predict", "sd", "t.test")
  importFrom("utils", "head")
to your NAMESPACE file.
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'CPET' 'GRIP' 'HWWT' 'individual_multivariate_outliers'
  'individual_univariate_outliers' 'metadata' 'multisiteQC'
Undocumented data sets:
  'CPET' 'GRIP' 'HWWT' 'metadata'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 3 WARNINGs, 2 NOTEs