* using log directory ‘/srv/hornik/tmp/CRAN/BranchGLM.Rcheck’ * using R Under development (unstable) (2024-01-26 r85832) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 17.0.6 (3) Debian flang-new version 17.0.6 (3) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘BranchGLM/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BranchGLM’ version ‘2.1.4’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [3s/4s] NOTE Maintainer: ‘Jacob Seedorff ’ New maintainer: Jacob Seedorff Old maintainer(s): Jacob Seedorff * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘BranchGLM’ can be installed ... [58s/58s] OK * used C++ compiler: ‘Debian clang version 17.0.6 (5)’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [4s/4s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [1s/1s] OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [10s/10s] ERROR Running ‘testthat.R’ [10s/10s] Running the tests in ‘tests/testthat.R’ failed. Complete output: > library(testthat) > library(BranchGLM) > > test_check("BranchGLM") Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 37.5% of all possible models Checked 62.5% of all possible models Checked 87.5% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 37.5% of all possible models Checked 62.5% of all possible models Checked 87.5% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 11.7188% of all possible models Checked 22.4609% of all possible models Checked 37.8906% of all possible models Checked 48.8281% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 13.6719% of all possible models Checked 24.6094% of all possible models Checked 38.2812% of all possible models Checked 49.2188% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 13.6719% of all possible models Checked 24.6094% of all possible models Checked 38.2812% of all possible models Checked 49.2188% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 13.6719% of all possible models Checked 24.6094% of all possible models Checked 38.2812% of all possible models Checked 49.2188% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 13.6719% of all possible models Checked 24.6094% of all possible models Checked 38.2812% of all possible models Checked 49.2188% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 37.5% of all possible models Checked 50% of all possible models Checked 62.5% of all possible models Checked 87.5% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 37.5% of all possible models Checked 50% of all possible models Checked 62.5% of all possible models Checked 87.5% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 5.96046e-06% of all possible models Checked 1.78814e-05% of all possible models Checked 0.390673% of all possible models Checked 1.46489% of all possible models Checked 11.5235% of all possible models Checked 21.875% of all possible models Checked 37.5% of all possible models Checked 48.4375% of all possible models Checked 75% of all possible models Checked 87.5% of all possible models Checked 98.4375% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 5.96046e-06% of all possible models Checked 1.78814e-05% of all possible models Checked 0.390673% of all possible models Checked 1.46489% of all possible models Checked 11.5235% of all possible models Checked 21.875% of all possible models Checked 37.5% of all possible models Checked 48.4375% of all possible models Checked 75% of all possible models Checked 87.5% of all possible models Checked 98.4375% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.00610352% of all possible models Checked 0.0183105% of all possible models Checked 0.250244% of all possible models Checked 1.40991% of all possible models Checked 11.7432% of all possible models Checked 21.8933% of all possible models Checked 31.9702% of all possible models Checked 43.7622% of all possible models Checked 53.8452% of all possible models Checked 68.7622% of all possible models Checked 78.8391% of all possible models Checked 88.8916% of all possible models Checked 99.2249% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.00610352% of all possible models Checked 0.0183105% of all possible models Checked 0.12207% of all possible models Checked 1.12305% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 37.5% of all possible models Checked 50% of all possible models Checked 62.5% of all possible models Checked 75% of all possible models Checked 87.5% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.012207% of all possible models Checked 0.20752% of all possible models Checked 1.3916% of all possible models Checked 12.5122% of all possible models Checked 25.0122% of all possible models Checked 35.9741% of all possible models Checked 46.8994% of all possible models Checked 59.4116% of all possible models Checked 71.8994% of all possible models Checked 81.9946% of all possible models Checked 92.0288% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 11.7188% of all possible models Checked 22.4609% of all possible models Checked 37.8906% of all possible models Checked 48.8281% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 11.7188% of all possible models Checked 22.4609% of all possible models Checked 37.8906% of all possible models Checked 48.8281% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 11.7188% of all possible models Checked 22.4609% of all possible models Checked 37.8906% of all possible models Checked 48.8281% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 11.7188% of all possible models Checked 22.4609% of all possible models Checked 37.8906% of all possible models Checked 48.8281% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.36719% of all possible models Checked 11.7188% of all possible models Checked 22.4609% of all possible models Checked 37.8906% of all possible models Checked 48.8281% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.390625% of all possible models Checked 1.95312% of all possible models Checked 12.8906% of all possible models Checked 25.3906% of all possible models Checked 50.3906% of all possible models Checked 75.3906% of all possible models Checked 87.8906% of all possible models Checked 98.8281% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.0976562% of all possible models Checked 0.292969% of all possible models Checked 1.36719% of all possible models Checked 12.1094% of all possible models Checked 22.168% of all possible models Checked 37.6953% of all possible models Checked 48.6328% of all possible models Checked 75.0977% of all possible models Checked 87.5977% of all possible models Checked 98.5352% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.0976562% of all possible models Checked 0.390625% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.75781% of all possible models Checked 12.6953% of all possible models Checked 25.1953% of all possible models Checked 50.1953% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.0976562% of all possible models Checked 0.292969% of all possible models Checked 1.36719% of all possible models Checked 12.1094% of all possible models Checked 22.168% of all possible models Checked 37.6953% of all possible models Checked 48.6328% of all possible models Checked 75.0977% of all possible models Checked 87.5977% of all possible models Checked 98.5352% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.0976562% of all possible models Checked 0.390625% of all possible models Checked 1.5625% of all possible models Checked 12.5% of all possible models Checked 25% of all possible models Checked 50% of all possible models Checked 100% of all possible models Checked 100% of all possible models Found best models Checked 0% of all possible models Checked 0.195312% of all possible models Checked 1.75781% of all possible models Checked 12.6953% of all possible models Checked 25.1953% of all possible models Checked 50.1953% of all possible models Checked 75.1953% of all possible models Checked 87.6953% of all possible models Checked 98.6328% of all possible models Checked 100% of all possible models Found best models [ FAIL 1 | WARN 0 | SKIP 0 | PASS 399 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Failure ('test-VSMethods.R:39:3'): Testing VS methods gamma ───────────────── coef(BB)[, 1] (`actual`) not equal to `myCoefs` (`expected`). actual | expected [1] 1.51832386 - 1.51832416 [1] [2] 0.57043816 - 0.57043810 [2] [3] 1.73215688 - 1.73215673 [3] [4] 0.67613377 - 0.67613372 [4] [5] 1.51369381 - 1.51369368 [5] [6] 2.35113347 - 2.35113329 [6] [7] 0.87335597 - 0.87335590 [7] [8] 0.00000000 | 0.00000000 [8] [9] 0.00000000 | 0.00000000 [9] [10] 0.78335762 - 0.78335753 [10] ... ... ... and 1 more ... [ FAIL 1 | WARN 0 | SKIP 0 | PASS 399 ] Error: Test failures Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [3s/3s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 1 ERROR, 1 NOTE