* using log directory 'd:/RCompile/CRANincoming/R-devel/BioM2.Rcheck' * using R Under development (unstable) (2024-05-15 r86556 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'BioM2/DESCRIPTION' ... OK * this is package 'BioM2' version '1.0.6' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'Shunjie Zhang ' New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Horvath (6:603, 6:676) Langfelder (6:661) Schwarz (6:130) WGCNA (6:583) Zhang (6:615) interpretable (6:194) omics (6:97, 6:250) CRAN repository db overrides: X-CRAN-Comment: Archived on 2024-04-20 as issues were not corrected in time. The Description field contains the following (possibly) invalid arXiv id: 1712.0036 The Description field contains .Identifying reproducible and interpretable Please refer to arXiv e-prints via their arXiv DOI . * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'BioM2' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [36s] OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 1 NOTE