# load in the test dataset
system.file("extdata", "testTaxonomy.rda", package="BeeBDC") |>
  load()


# Test the expected results
testthat::test_that("testTaxonomy expected number of columns", {
  testthat::expect_equal(ncol(testTaxonomy), 24)
})
testthat::test_that("testTaxonomy expect that number of unique ids == number of overall rows", {
  testthat::expect_equal(length(unique(testTaxonomy$id)), nrow(testTaxonomy))
})
testthat::test_that("testTaxonomy expect that number of 0[accid] == accepted[taxostatus]", {
  testthat::expect_equal(sum(testTaxonomy$accid == 0), 
                         sum(testTaxonomy$taxonomic_status == "accepted"))
})

  # Test classes
testthat::test_that("testTaxonomy expected class", {
  testthat::expect_type(testTaxonomy, "list")
})
testthat::test_that("testTaxonomy expected class", {
  testthat::expect_equal(attributes(testTaxonomy)$class, c("spec_tbl_df", "tbl_df","tbl","data.frame" ))
})

testthat::test_that("DownloadTest_skipOnline",{
# Skip this test on MAC on GITHUB due to 403 error in tests
  if(stringr::str_detect(Sys.info() %>% as.character(), "Darwin") %>% any()){
    skip_on_ci()}
#  skip_on_ci()
  
# Define download headers
#headers <- c(Authorization = paste("token", "20271361303ce042ff9cce49ecd9c8f23594ed4032e83f150e535dbd2b67297ea88448e3ca29260f6c416f581834094a898089d90f2229111845f01ef8b75f46"))
Sys.getenv("BEEBDC_SECRET_GITHUB")
Authorization <- Sys.getenv("BEEBDC_SECRET_GITHUB")
## Set some options for accessing the data
  userAgent <- paste0(sprintf("BeeBDC-tests/%s (R/%s.%s)",
                              as.character(utils::packageVersion("BeeBDC")),
                              R.version$major, R.version$minor),
                      "; R (",R.version$major,".", R.version$minor, " ",
                      R.version$platform, " ", R.version$arch," ",
                      R.version$os,")") 
  
  options(timeout=400,
          HTTPUserAgent = userAgent)
  OS <- dplyr::if_else(.Platform$OS.type == "unix",
                       "MacLinux",
                       "Windows")
if(OS == "Windows"){
  mode <- "wb"
}else{
  mode <- "wb"
}
taxonomyFile <- NULL
# load in the full dataset
taxonomyFile <- BeeBDC::beesTaxonomy(mode = mode,
                                     headers = NULL,
                                     token = Authorization)


if(!is.null(taxonomyFile)){
# Test the expected results
testthat::test_that("beesTaxonomy expected number of columns", {
  testthat::expect_equal(ncol(taxonomyFile), 24)
})
testthat::test_that("beesTaxonomy expect that number of unique ids == number of overall rows", {
  testthat::expect_equal(length(unique(taxonomyFile$id)), nrow(taxonomyFile))
})
testthat::test_that("beesTaxonomy expect that number of 0[accid] == accepted[taxostatus]", {
  testthat::expect_equal(sum(taxonomyFile$accid == 0), 
                         sum(taxonomyFile$taxonomic_status == "accepted"))
})

# Test classes
testthat::test_that("beesTaxonomy expected class", {
  testthat::expect_type(taxonomyFile, "list")
})
testthat::test_that("beesTaxonomy expected class", {
  testthat::expect_equal(attributes(taxonomyFile)$class, c("spec_tbl_df", "tbl_df","tbl","data.frame" ))
})

} #END !is.null
}) # END testthat::test_that