* using log directory ‘/srv/hornik/tmp/CRAN_pretest/BayesianFitForecast.Rcheck’
* using R Under development (unstable) (2024-11-29 r87406)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 19.1.1 (1)
    Debian flang-new version 19.1.1 (1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘BayesianFitForecast/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BayesianFitForecast’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/4s] NOTE
Maintainer: ‘Gerardo Chowell <gchowell@gsu.edu>’

New submission

Possibly misspelled words in DESCRIPTION:
  Grinsztajn (12:382)
  Karami (12:324)
  al (12:334, 12:396)
  et (12:331, 12:393)

The Description field should not start with the package name,
  'This package' or similar.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BayesianFitForecast’ can be installed ... [11s/11s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/1s] OK
* checking whether the package can be unloaded cleanly ... [2s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [2s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/1s] OK
* checking loading without being on the library search path ... [3s/3s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [9s/6s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [4s/4s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/4s] ERROR
  Running ‘testthat.R’ [4s/4s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(BayesianFitForecast)
  > 
  > test_check("BayesianFitForecast")
  Option file path: /srv/hornik/tmp/CRAN_pretest/BayesianFitForecast.Rcheck/BayesianFitForecast/extdata/option.R
  Excel file path: /srv/hornik/tmp/CRAN_pretest/BayesianFitForecast.Rcheck/BayesianFitForecast/extdata/SanFrancisco.xlsx
  Output path: /tmp/Rtmpmthm9e/working_dir/RtmpbX0Gpc
  Loading required package: StanHeaders
  
  rstan version 2.32.6 (Stan version 2.32.2)
  
  For execution on a local, multicore CPU with excess RAM we recommend calling
  options(mc.cores = parallel::detectCores()).
  To avoid recompilation of unchanged Stan programs, we recommend calling
  rstan_options(auto_write = TRUE)
  For within-chain threading using `reduce_sum()` or `map_rect()` Stan functions,
  change `threads_per_chain` option:
  rstan_options(threads_per_chain = 1)
  
  Error in file(fname, "rt") : cannot open the connection
  Option file path: /srv/hornik/tmp/CRAN_pretest/BayesianFitForecast.Rcheck/BayesianFitForecast/extdata/option.R
  Excel file path: /srv/hornik/tmp/CRAN_pretest/BayesianFitForecast.Rcheck/BayesianFitForecast/extdata/SanFrancisco.xlsx
  Output path: /tmp/Rtmpmthm9e/working_dir/RtmpbX0Gpc
  Error in file(fname, "rt") : cannot open the connection
  [ FAIL 2 | WARN 4 | SKIP 0 | PASS 8 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test-Run_MCMC.R:25:5'): Run_MCMC works with example files ─────────
  Expected `Run_MCMC(option_file, excel_file, output_path)` to run without any errors.
  i Actually got a <simpleError> with text:
    cannot open model file "/tmp/Rtmpmthm9e/working_dir/RtmpbX0Gpc/ode_model.stan"
  Backtrace:
      ▆
   1. └─base::eval(...)
   2.   └─base::eval(...)
   3.     └─testthat::expect_no_error(Run_MCMC(option_file, excel_file, output_path)) at test-Run_MCMC.R:25:5
  ── Failure ('test-Run_analyzeResults.R:20:5'): Run_MCMC works with example files ──
  Expected `Run_MCMC(option_file, excel_file, output_path)` to run without any errors.
  i Actually got a <simpleError> with text:
    cannot open model file "/tmp/Rtmpmthm9e/working_dir/RtmpbX0Gpc/ode_model.stan"
  Backtrace:
      ▆
   1. └─base::eval(...)
   2.   └─base::eval(...)
   3.     └─testthat::expect_no_error(Run_MCMC(option_file, excel_file, output_path)) at test-Run_analyzeResults.R:20:5
  
  [ FAIL 2 | WARN 4 | SKIP 0 | PASS 8 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR, 1 NOTE