test_that("bayes_mode works with external MCMC output", { set.seed(1) mu = c(0.5,6) sigma = c(1,2) nu = c(5,5) p = c(0.8,0.2) dist_type = "continuous" data = c(sn::rst(p[1]*1000, mu[1], sigma[1], nu = nu[1]), sn::rst(p[2]*1000, mu[2], sigma[2], nu = nu[2])) fit = c(eta = p, mu = mu, sigma = sigma, xi = c(0,0), nu = nu) fit = rbind(fit, fit) pdf_func = function(x, pars) { sn::dst(x, pars["mu"], pars["sigma"], pars["xi"], pars["nu"]) } bayesmix = bayes_mixture(fit, data, burnin = 1, pdf_func = pdf_func, dist_type = dist_type, loc = "mu") bayesmode = bayes_mode(bayesmix) m = apply(bayesmode$modes,2,mean) m = m[order(m)] m = m[!is.na(m)] expect_equal(sum(abs(m-mu)<0.1), 2) skip_on_ci() expect_snapshot(summary(bayesmix)) expect_snapshot(summary(bayesmode)) }) test_that("bayes_mode works with normal mixture", { set.seed(123) mu = c(-5,5) # retrieve galaxy data y = rnorm(200, mu) # estimation bayesmix = bayes_fit(data = y, K = 2, #not many to run the example rapidly dist = "normal", nb_iter = 500, #not many to run the example rapidly burnin = 100) # mode estimation bayesmode = bayes_mode(bayesmix) m = apply(bayesmode$modes,2,mean) m = m[order(m)] m = m[!is.na(m)] expect_equal(sum(abs(m-mu)<0.1), 2) skip_on_ci() expect_snapshot(summary(bayesmix)) expect_snapshot(summary(bayesmode)) }) test_that("bayes_mode works with skew_normal mixture", { set.seed(123) mu = c(-5,5) # retrieve galaxy data y = rnorm(200, mu) # estimation bayesmix = bayes_fit(data = y, K = 2, #not many to run the example rapidly dist = "skew_normal", nb_iter = 500, #not many to run the example rapidly burnin = 100) # mode estimation bayesmode = bayes_mode(bayesmix) m = apply(bayesmode$modes,2,mean, na.omit = T) m = m[order(m)] m = m[!is.na(m)] skip_on_cran() expect_equal(sum(abs(m-mu)<0.5), 2) skip_on_ci() expect_snapshot(summary(bayesmix)) expect_snapshot(summary(bayesmode)) }) test_that("bayes_mode works with shifted poisson mixture", { set.seed(123) mu = c(0,5) # data y = c(rpois(100, 1) + mu[1], rpois(100, 1) + mu[2]) # estimation bayesmix = bayes_fit(data = y, K = 2, #not many to run the example rapidly dist = "shifted_poisson", nb_iter = 500, #not many to run the example rapidly burnin = 100) # mode estimation bayesmode = bayes_mode(bayesmix) # check the plots and summary # plot(bayesmix) # check the modes m = apply(bayesmode$modes,2,median, na.rm=T) m = m[order(m)] m = m[!is.na(m)] expect_equal(sum(abs(m-mu)<0.5), 2) skip_on_ci() expect_snapshot(summary(bayesmix)) expect_snapshot(summary(bayesmode)) }) test_that("bayes_mode works with poisson mixture", { set.seed(123) # retrieve galaxy data y = c(rpois(100, 0.5), rpois(100, 10)) # estimation bayesmix = bayes_fit(data = y, K = 2, #not many to run the example rapidly dist = "poisson", nb_iter = 500, #not many to run the example rapidly burnin = 100) # mode estimation bayesmode = bayes_mode(bayesmix) # check the plots and summary # plot(bayesmix) # check the modes m = apply(bayesmode$modes,2,median, na.rm=T) m = m[order(m)] m = m[!is.na(m)] expect_equal(sum(abs(m-c(0,10))<2), 2) skip_on_ci() expect_snapshot(summary(bayesmix)) expect_snapshot(summary(bayesmode)) })