if (.if_run_ex_covsel()) { d_sim_binom_cov <- d_sim_binom_cov id_to_sample <- seq(1, max(d_sim_binom_cov$ID), by = 5) df_er_ae_covsel_test <- d_sim_binom_cov |> dplyr::filter( AETYPE == "ae_covsel_test", ID %in% id_to_sample ) |> dplyr::mutate( AUCss_1000 = AUCss / 1000, BAGE_10 = BAGE / 10, BWT_10 = BWT / 10, BHBA1C_5 = BHBA1C / 5 ) # Create ermod_bin objects for testing ------------------------------------- set.seed(1234) ermod_bin <- dev_ermod_bin( data = df_er_ae_covsel_test, var_resp = "AEFLAG", var_exposure = "AUCss_1000", var_cov = "BHBA1C_5", verbosity_level = 0, # Need large number of samples to calculate p_direction precisely chains = 4, iter = 2000 ) ermod_bin_cov_sel <- new_ermod_bin_cov_sel( mod = extract_mod(ermod_bin), data = df_er_ae_covsel_test, var_resp = "AEFLAG", var_exposure = "AUCss_1000", var_cov_candidates = c("BAGE_10", "BWT_10", "BHBA1C_5", "RACE", "VISC"), var_cov = c("BHBA1C_5"), var_selected = c("AUCss_1000", "BHBA1C_5"), cv_method = c("LOO", "kfold"), cvvs = NULL, rk = NULL ) test_that("p_direction", { expect_equal(p_direction(ermod_bin_cov_sel, as_num = TRUE), 0.9955) expect_equal( p_direction(ermod_bin_cov_sel, as_num = TRUE, as_p = TRUE), 0.009 ) }) }