context("reduceResultsExperimentsParallel") test_that("reduceResultsExperimentsParallel", { njobs = 3 reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addProblem(reg, "p2", static = 2) addAlgorithm(reg, id = "a1", fun = function(static, dynamic) static*1) addAlgorithm(reg, id = "a2", fun = function(static, dynamic) static*2) addExperiments(reg, c("p1", "p2"), c("a1", "a2"), 2) submitJobs(reg) waitForJobs(reg) data = reduceResultsExperimentsParallel(reg, fun = function(job, res) data.frame(y = res), strings.as.factors = FALSE, njobs = njobs) data2 = data.frame( id = 1:8, prob = c("p1", "p1", "p1", "p1", "p2", "p2", "p2", "p2"), algo = c("a1", "a1", "a2", "a2", "a1", "a1", "a2", "a2"), repl = as.integer(c(1,2,1,2,1,2,1,2)), y = c(1,1,2,2,2,2,4,4), stringsAsFactors = FALSE ) attr(data2, "prob.pars.names") = character(0) attr(data2, "algo.pars.names") = character(0) class(data2) = c("ReducedResultsExperiments", "data.frame") expect_equal(data, data2) reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic, a) 1*static) addAlgorithm(reg, id = "a2", fun = function(static, dynamic, a, b) 2*static) ad1 = makeDesign("a1", exhaustive = list(a = 1:2)) ad2 = makeDesign("a2", exhaustive = list(a = 3, b = c("b1", "b2"))) addExperiments(reg, "p1", list(ad1, ad2)) submitJobs(reg) waitForJobs(reg) data = reduceResultsExperimentsParallel(reg, fun = function(job, res) data.frame(y = res), strings.as.factors = TRUE) data2 = data.frame( prob = c("p1", "p1", "p1", "p1"), algo = c("a1", "a1", "a2", "a2"), a = c(1,2,3,3), repl = rep(1L, 4), y = c(1,1,2,2), b = c(NA,NA,"b1","b2"), stringsAsFactors = TRUE) attr(data2, "prob.pars.names") = character(0) attr(data2, "algo.pars.names") = c("a", "b") class(data2) = c("ReducedResultsExperiments", "data.frame") expect_equal(getResultVars(data, "prob.pars"), character(0)) expect_equal(getResultVars(data, "algo.pars"), c("a", "b")) expect_equal(getResultVars(data, "group"), c("prob", "algo", "a", "b")) expect_equal(getResultVars(data, "result"), "y") reg = makeTestRegistry() reg$seed = 1 addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic, a) 1*static) addExperiments(reg, "p1", ad1) submitJobs(reg) waitForJobs(reg) data = reduceResultsExperiments(reg, fun = function(job, res) data.frame(y = res, seed = job$seed), strings.as.factors = FALSE) data2 = data.frame( id = 1:2, prob = c("p1", "p1"), algo = c("a1", "a1"), a = c(1,2), repl = rep(1L, 2), y = c(1,1), seed = 1:2, stringsAsFactors = FALSE) attr(data2, "prob.pars.names") = character(0) attr(data2, "algo.pars.names") = c("a") class(data2) = c("ReducedResultsExperiments", "data.frame") expect_equal(data, data2) }) test_that("reduceResultsExperimentsParallel works on empty id sets", { reg = makeTestRegistry() reg$seed = 1 addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic, a) 1*static) addExperiments(reg, repls = 10) data2 = data.frame() attr(data2, "prob.pars.names") = character(0) attr(data2, "algo.pars.names") = character(0) class(data2) = c("ReducedResultsExperiments", "data.frame") expect_equal( reduceResultsExperimentsParallel(reg, fun = function(job, res) data.frame(y = res, seed = job$seed), strings.as.factors = FALSE), data2) submitJobs(reg) waitForJobs(reg) expect_equal( reduceResultsExperimentsParallel(reg, fun = function(job, res) data.frame(y = res, seed = job$seed), strings.as.factors = FALSE, ids = integer(0)), data2) }) test_that("reduceResultsExperimentsParallel works with default fun", { reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic) list(y = 1)) addExperiments(reg, "p1", "a1", repls = 2) submitJobs(reg) waitForJobs(reg) z = reduceResultsExperimentsParallel(reg) expect_equal(z, data.frame( id = 1:2, prob = "p1", algo = "a1", repl = 1:2, y = 1), check.attributes = FALSE) reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic) 1) addExperiments(reg, "p1", "a1", repls = 2) submitJobs(reg) waitForJobs(reg) z = reduceResultsExperimentsParallel(reg) expect_equal(z, data.frame( id = 1:2, prob = "p1", algo = "a1", repl = 1:2, X1 = 1), check.attributes = FALSE) reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic) c(foo = 1, bar = 2)) addExperiments(reg, "p1", "a1", repls = 2) submitJobs(reg) waitForJobs(reg) z = reduceResultsExperimentsParallel(reg) expect_equal(z, data.frame( id = 1:2, prob = "p1", algo = "a1", repl = 1:2, foo = 1, bar = 2), check.attributes = FALSE) }) # we had a bug here test_that("reduceResultsExperimentsParallel works with ids", { reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addProblem(reg, "p2", static = 2) addAlgorithm(reg, id = "a1", fun = function(static, dynamic) static*1) addExperiments(reg, c("p1", "p2"), "a1", 2) submitJobs(reg) waitForJobs(reg) ids = findExperiments(reg, prob.pattern = "p2") data = reduceResultsExperimentsParallel(reg, ids, fun = function(job, res) data.frame(y = res), strings.as.factors = FALSE, njobs = 2) expect_equal(rownames(data), as.character(ids)) expect_equal(data$prob, c("p2", "p2")) expect_equal(data$algo, c("a1", "a1")) }) test_that("reduceResultsExperimentsParallel applies on missing results", { reg = makeTestRegistry() addProblem(reg, "p1", static = 1) addAlgorithm(reg, id = "a1", fun = function(static, dynamic) list(y = 1)) ids = addExperiments(reg, "p1", "a1", repls = 3) fun = function(job, res) list(jid = job$id) expect_error(reduceResultsExperimentsParallel(reg, ids = 1:3, fun = fun, apply.on.missing = FALSE, "no results")) res = reduceResultsExperimentsParallel(reg, ids = 1:3, fun = fun, apply.on.missing = TRUE) expect_is(res, "data.frame") expect_identical(res$jid, 1:3) })