R Under development (unstable) (2025-02-15 r87726 ucrt) -- "Unsuffered Consequences"
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> if (requireNamespace("testthat", quietly = TRUE)) {
+     library(testthat)
+     library(BaseSet)
+ 
+     test_check("BaseSet")
+ }

Attaching package: 'BaseSet'

The following object is masked from 'package:stats':

    filter

The following object is masked from 'package:base':

    union

Loading required package: BiocGenerics
Loading required package: generics

Attaching package: 'generics'

The following object is masked from 'package:BaseSet':

    union

The following objects are masked from 'package:base':

    as.difftime, as.factor, as.ordered, intersect, is.element, setdiff,
    setequal, union


Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, is.unsorted, lapply,
    mapply, match, mget, order, paste, pmax, pmax.int, pmin, pmin.int,
    rank, rbind, rownames, sapply, saveRDS, table, tapply, unique,
    unsplit, which.max, which.min

Loading required package: Biobase
Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:BaseSet':

    active

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname


Attaching package: 'IRanges'

The following object is masked from 'package:grDevices':

    windows


Attaching package: 'AnnotationDbi'

The following object is masked from 'package:BaseSet':

    select

Loading required package: XML
Loading required package: graph

Attaching package: 'graph'

The following object is masked from 'package:XML':

    addNode

The following objects are masked from 'package:BaseSet':

    complement, intersection


Attaching package: 'GSEABase'

The following object is masked from 'package:BaseSet':

    incidence

[ FAIL 0 | WARN 0 | SKIP 0 | PASS 482 ]
> 
> proc.time()
   user  system elapsed 
   6.78    0.95    7.71