* installing *source* package ‘Ball’ ...
** this is package ‘Ball’ version ‘1.3.14’
** using staged installation
checking for gcc... gcc-14 -std=gnu23
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether gcc-14 -std=gnu23 accepts -g... yes
checking for gcc-14 -std=gnu23 option to enable C11 features... none needed
*****************************************************************************************
Complier code exists in src/ directory. Install R package according to the complier code.
*****************************************************************************************
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BD.c -o BD.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c BI.c -o BI.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c ball_init.c -o ball_init.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bcor.c -o bcor.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bd_gwas.c -o bd_gwas.o
bd_gwas.c: In function ‘bd_gwas’:
bd_gwas.c:254:5: warning: ‘batch_num’ may be used uninitialized [-Wmaybe-uninitialized]
  254 |     free_int_matrix(randn_mat, batch_num, n - 1);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bd_gwas.c:211:9: note: ‘batch_num’ was declared here
  211 |     int batch_num, fix_batch_num;
      |         ^~~~~~~~~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c bdd_matrix.c -o bdd_matrix.o
bdd_matrix.c: In function ‘joint_kernel_matrix_bias’:
bdd_matrix.c:305:29: warning: unused variable ‘m’ [-Wunused-variable]
  305 |             int i, j, s, t, m;
      |                             ^
bdd_matrix.c:305:26: warning: unused variable ‘t’ [-Wunused-variable]
  305 |             int i, j, s, t, m;
      |                          ^
bdd_matrix.c:305:23: warning: unused variable ‘s’ [-Wunused-variable]
  305 |             int i, j, s, t, m;
      |                       ^
bdd_matrix.c: In function ‘cross_kernel_matrix_bias_crude’:
bdd_matrix.c:353:12: warning: unused variable ‘c1’ [-Wunused-variable]
  353 |     double c1 = 1.0;
      |            ^~
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kbcov.c -o kbcov.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c kbd.c -o kbd.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c median.c -o median.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c surv.c -o surv.o
gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native  -c utilities.c -o utilities.o
gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o median.o surv.o utilities.o -fopenmp -L/home/hornik/tmp/R/lib -lR
installing to /home/hornik/tmp/CRAN_recheck/Ball.Rcheck/00LOCK-Ball/00new/Ball/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ball)