* installing *source* package ‘Ball’ ...
** this is package ‘Ball’ version ‘1.3.14’
** using staged installation
checking for gcc... clang-19 -std=gnu23
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C... yes
checking whether clang-19 -std=gnu23 accepts -g... yes
checking for clang-19 -std=gnu23 option to enable C11 features... -std=gnu11
*****************************************************************************************
Complier code exists in src/ directory. Install R package according to the complier code.
*****************************************************************************************
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘Debian clang version 19.1.7 (3+b1)’
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c BD.c -o BD.o
BD.c:32:12: warning: variable 'TS_weight0' set but not used [-Wunused-but-set-variable]
   32 |     double TS_weight0 = 0.0, SS_weight0 = 0.0, TS_weight1 = 0.0, SS_weight1 = 0.0;
      |            ^
BD.c:32:30: warning: variable 'SS_weight0' set but not used [-Wunused-but-set-variable]
   32 |     double TS_weight0 = 0.0, SS_weight0 = 0.0, TS_weight1 = 0.0, SS_weight1 = 0.0;
      |                              ^
BD.c:32:48: warning: variable 'TS_weight1' set but not used [-Wunused-but-set-variable]
   32 |     double TS_weight0 = 0.0, SS_weight0 = 0.0, TS_weight1 = 0.0, SS_weight1 = 0.0;
      |                                                ^
BD.c:32:66: warning: variable 'SS_weight1' set but not used [-Wunused-but-set-variable]
   32 |     double TS_weight0 = 0.0, SS_weight0 = 0.0, TS_weight1 = 0.0, SS_weight1 = 0.0;
      |                                                                  ^
4 warnings generated.
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c BI.c -o BI.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c ball_init.c -o ball_init.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c bcor.c -o bcor.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c bd_gwas.c -o bd_gwas.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c bdd_matrix.c -o bdd_matrix.o
bdd_matrix.c:305:23: warning: unused variable 's' [-Wunused-variable]
  305 |             int i, j, s, t, m;
      |                       ^
bdd_matrix.c:305:26: warning: unused variable 't' [-Wunused-variable]
  305 |             int i, j, s, t, m;
      |                          ^
bdd_matrix.c:305:29: warning: unused variable 'm' [-Wunused-variable]
  305 |             int i, j, s, t, m;
      |                             ^
bdd_matrix.c:353:12: warning: unused variable 'c1' [-Wunused-variable]
  353 |     double c1 = 1.0;
      |            ^~
4 warnings generated.
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c kbcov.c -o kbcov.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c kbd.c -o kbd.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c median.c -o median.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c surv.c -o surv.o
clang-19 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -DR_BUILD  -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c utilities.c -o utilities.o
clang-19 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o Ball.so BD.o BI.o ball_init.o bcor.o bd_gwas.o bdd_matrix.o kbcov.o kbd.o median.o surv.o utilities.o -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/Ball.Rcheck/00LOCK-Ball/00new/Ball/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Ball)