* using log directory ‘/srv/hornik/tmp/CRAN_pretest/BalanceMate.Rcheck’ * using R Under development (unstable) (2024-12-19 r87451) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.5 (1) Debian flang-new version 19.1.5 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘BalanceMate/DESCRIPTION’ ... OK * this is package ‘BalanceMate’ version ‘0.0.0.9000’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [4s/9s] NOTE Maintainer: ‘Jean Monéger ’ New submission Version contains large components (0.0.0.9000) Possibly misspelled words in DESCRIPTION: AMTI (7:326) Cité (7:437) NetForce (7:341) Pre (2:18) Université (7:420) pre (7:156) Found the following (possibly) invalid URLs: URL: https://cran.r-project.org/web/packages/signal/index.html From: inst/doc/Butterworth_it.html Status: 200 Message: OK CRAN URL not in canonical form The canonical URL of the CRAN page for a package is https://CRAN.R-project.org/package=pkgname The Title field should be in title case. Current version is: ‘Managing, Pre-processing, And Processing Postural Data’ In title case that is: ‘Managing, Pre-Processing, and Processing Postural Data’ The Description field should not start with the package name, 'This package' or similar. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BalanceMate’ can be installed ... [2s/2s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking data for ASCII and uncompressed saves ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [0s/0s] ERROR Running examples in ‘BalanceMate-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Butterworth_it > ### Title: Apply Butterworth Filter to Specified Columns > ### Aliases: Butterworth_it > > ### ** Examples > > # Find subdirectory of Example data in the original .txt format exported from AMTI Netforce software > # Note: we need to convert compressed rdata to original txt file > files <- paste0("Postural_Data", LETTERS[1:6]) > > # Locate the directory containing the .Rdata files within the package > data_dir <- system.file("data", package = "BalanceMate") > > # Create a temporary directory to store the .txt files > temp_data_dir <- file.path(tempdir(), "data") > dir.create(temp_data_dir, showWarnings = FALSE) > > # Process each file: load, optionally add a blank row, and write to .txt > invisible(lapply(files, function(f) { + # Load the .Rdata file from the package's extdata directory + load(file.path(data_dir, paste0(f, ".Rdata"))) + + data <- get(f) + # Write the data to a .txt file in the temporary directory + write.table(data, file = file.path(temp_data_dir, paste0(f, ".txt")), sep = ",", + row.names = FALSE, col.names = FALSE, quote = FALSE) + })) Warning in readChar(con, 5L, useBytes = TRUE) : cannot open compressed file '/srv/hornik/tmp/CRAN_pretest/BalanceMate.Rcheck/BalanceMate/data/Postural_DataA.Rdata', probable reason 'No such file or directory' Error in readChar(con, 5L, useBytes = TRUE) : cannot open the connection Calls: lapply -> FUN -> load -> readChar Execution halted * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... [2s/2s] OK Running ‘testthat.R’ [2s/2s] * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [10s/10s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘Butterworth_it.Rmd’ using rmarkdown Quitting from lines 116-156 [unnamed-chunk-3] (Butterworth_it.Rmd) Error: processing vignette 'Butterworth_it.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘Butterworth_it.Rmd’ --- re-building ‘CoPX_ComputeR.Rmd’ using rmarkdown Quitting from lines 43-76 [unnamed-chunk-2] (CoPX_ComputeR.Rmd) Error: processing vignette 'CoPX_ComputeR.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘CoPX_ComputeR.Rmd’ --- re-building ‘CoPY_ComputeR.Rmd’ using rmarkdown Quitting from lines 43-72 [unnamed-chunk-2] (CoPY_ComputeR.Rmd) Error: processing vignette 'CoPY_ComputeR.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘CoPY_ComputeR.Rmd’ --- re-building ‘Compute_Postural_Indicators.Rmd’ using rmarkdown ** Processing: /srv/hornik/tmp/CRAN_pretest/BalanceMate.Rcheck/vign_test/BalanceMate/vignettes/Compute_Postural_Indicators_files/figure-html/unnamed-chunk-2-1.png 288x288 pixels, 3x8 bits/pixel, RGB Input IDAT size = 22767 bytes Input file size = 22869 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15625 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15625 Output IDAT size = 15625 bytes (7142 bytes decrease) Output file size = 15703 bytes (7166 bytes = 31.33% decrease) Quitting from lines 73-147 [unnamed-chunk-3] (Compute_Postural_Indicators.Rmd) Error: processing vignette 'Compute_Postural_Indicators.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘Compute_Postural_Indicators.Rmd’ --- re-building ‘EllipseArea.Rmd’ using rmarkdown Quitting from lines 35-68 [unnamed-chunk-2] (EllipseArea.Rmd) Error: processing vignette 'EllipseArea.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘EllipseArea.Rmd’ --- re-building ‘Epoch_SliceR.Rmd’ using rmarkdown Quitting from lines 34-69 [unnamed-chunk-2] (Epoch_SliceR.Rmd) Error: processing vignette 'Epoch_SliceR.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘Epoch_SliceR.Rmd’ --- re-building ‘Mean_CoP_ComputeR.Rmd’ using rmarkdown Quitting from lines 39-70 [unnamed-chunk-2] (Mean_CoP_ComputeR.Rmd) Error: processing vignette 'Mean_CoP_ComputeR.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘Mean_CoP_ComputeR.Rmd’ --- re-building ‘Merge_PosData.Rmd’ using rmarkdown Quitting from lines 45-74 [unnamed-chunk-3] (Merge_PosData.Rmd) Error: processing vignette 'Merge_PosData.Rmd' failed with diagnostics: cannot change working directory --- failed re-building ‘Merge_PosData.Rmd’ --- re-building ‘SD_CoP_ComputeR.Rmd’ using rmarkdown Quitting from lines 40-70 [unnamed-chunk-2] (SD_CoP_ComputeR.Rmd) Error: processing vignette 'SD_CoP_ComputeR.Rmd' failed with diagnostics: cannot change working directory --- failed re-building ‘SD_CoP_ComputeR.Rmd’ --- re-building ‘SPL_ComputeR.Rmd’ using rmarkdown Quitting from lines 40-70 [unnamed-chunk-2] (SPL_ComputeR.Rmd) Error: processing vignette 'SPL_ComputeR.Rmd' failed with diagnostics: cannot change working directory --- failed re-building ‘SPL_ComputeR.Rmd’ --- re-building ‘SpaghettEllipse.Rmd’ using rmarkdown Quitting from lines 36-78 [unnamed-chunk-2] (SpaghettEllipse.Rmd) Error: processing vignette 'SpaghettEllipse.Rmd' failed with diagnostics: cannot open the connection --- failed re-building ‘SpaghettEllipse.Rmd’ --- re-building ‘Time_StampeR.Rmd’ using rmarkdown Quitting from lines 96-153 [unnamed-chunk-3] (Time_StampeR.Rmd) Error: processing vignette 'Time_StampeR.Rmd' failed with diagnostics: cannot change working directory --- failed re-building ‘Time_StampeR.Rmd’ SUMMARY: processing the following files failed: ‘Butterworth_it.Rmd’ ‘CoPX_ComputeR.Rmd’ ‘CoPY_ComputeR.Rmd’ ‘Compute_Postural_Indicators.Rmd’ ‘EllipseArea.Rmd’ ‘Epoch_SliceR.Rmd’ ‘Mean_CoP_ComputeR.Rmd’ ‘Merge_PosData.Rmd’ ‘SD_CoP_ComputeR.Rmd’ ‘SPL_ComputeR.Rmd’ ‘SpaghettEllipse.Rmd’ ‘Time_StampeR.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [3s/2s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 ERRORs, 1 NOTE