* using log directory ‘/srv/hornik/tmp/CRAN/BaSTA.Rcheck’ * using R Under development (unstable) (2024-07-04 r86873) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 18.1.8 (1+b1) Debian flang-new version 18.1.8 (1+b1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘BaSTA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘BaSTA’ version ‘2.0.0’ * checking CRAN incoming feasibility ... [3s/3s] NOTE Maintainer: ‘Fernando Colchero ’ New submission Package was archived on CRAN Possibly misspelled words in DESCRIPTION: Colchero (13:290, 13:363) Rebke (13:307) al (13:381) emph (13:373) et (13:378) CRAN repository db overrides: X-CRAN-Comment: Archived on 2023-04-10 as issues were not corrected despite reminders. * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘BaSTA’ can be installed ... [3s/3s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... NOTE Mismatches for apparent methods not registered: .CalcLike: function(dataObj, ...) .CalcLike.bastacensus: function(dataObj, parCovObj, parObj, fullParObj, ageObj, likeObj, algObj, ind, .CalcMort, .CalcMort.numeric, .CalcMort.matrix, .CalcSurv, .CalcSurv.numeric, .CalcSurv.matrix, .CalcCumHaz, .CalcCumHaz.numeric, .CalcCumHaz.matrix) .CalcLike: function(dataObj, ...) .CalcLike.bastacmr: function(dataObj, parCovObj, parObj, fullParObj, ageObj, likeObj, algObj, ind, .CalcMort, .CalcMort.numeric, .CalcMort.matrix, .CalcSurv, .CalcSurv.numeric, .CalcSurv.matrix, .CalcCumHaz, .CalcCumHaz.numeric, .CalcCumHaz.matrix) .SampleAges: function(ageObj, ...) .SampleAges.agecmr: function(ageObj, dataObj, algObj) .SampleAges: function(ageObj, ...) .SampleAges.agecensus: function(ageObj, dataObj, algObj) .AssignMinAge: function(ageObj, ...) .AssignMinAge.minAge: function(ageObj, dataObj, algObj) .AssignMinAge: function(ageObj, ...) .AssignMinAge.noMinAge: function(ageObj, dataObj, algObj) See section ‘Registering S3 methods’ in the ‘Writing R Extensions’ manual. * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s/7s] OK * checking Rd files ... [0s/0s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking installed files from ‘inst/doc’ ... OK * checking examples ... [2s/2s] OK * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [1s/1s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 2 NOTEs