* using log directory ‘/home/hornik/tmp/CRAN_pretest/BaHZING.Rcheck’
* using R Under development (unstable) (2026-09-30 r90605)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 23.1.0 (2)
    Debian flang version 23.1.0 (2)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-10-01 21:37:13 UTC
* checking for file ‘BaHZING/DESCRIPTION’ ... OK
* this is package ‘BaHZING’ version ‘1.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Jesse Goodrich <jagoodri@usc.edu>’

New submission

Package was archived on CRAN

Possibly misspelled words in DESCRIPTION:
  microbiome (17:5)

CRAN repository db overrides:
  X-CRAN-Comment: Archived on 2026-03-25 as issues were not corrected
    despite reminders.
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BaHZING’ can be installed ... [16s/16s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [4s/4s] OK
* checking whether the package can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the package can be unloaded cleanly ... [4s/4s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/4s] OK
* checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
* checking loading without being on the library search path ... [5s/5s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [19s/19s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... INFO
Exported functions without usage information:
  BaHZING_Model Format_BaHZING Ridge_BaHZING_Model
* checking Rd \usage sections ... OK
* checking Rd contents ... NOTE
Rd files without \usage:
  ‘BaHZING_Model.Rd’ ‘Format_BaHZING.Rd’ ‘Ridge_BaHZING_Model.Rd’
\arguments should not be documented without \usage.
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [5s/5s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [318s/318s] OK
  Running ‘testthat.R’ [317s/318s]
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs