* installing *source* package 'BLMEngineInR' ... ** using staged installation ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++11 g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c AdjustForToxMode.cpp -o AdjustForToxMode.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c AdjustForWHAM.cpp -o AdjustForWHAM.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CHESS.cpp -o CHESS.o CHESS.cpp: In function 'Rcpp::List CHESS(Rcpp::String, double, int, bool, int, Rcpp::CharacterVector, Rcpp::NumericVector, int, Rcpp::CharacterVector, Rcpp::CharacterVector, Rcpp::NumericVector, int, Rcpp::CharacterVector, Rcpp::CharacterVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::CharacterVector, bool, int, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, double, double, bool, Rcpp::String, int, int, Rcpp::IntegerVector, double)': CHESS.cpp:233:10: warning: unused variable 'CalcCA' [-Wunused-variable] 233 | double CalcCA; | ^~~~~~ CHESS.cpp:234:7: warning: unused variable 'i' [-Wunused-variable] 234 | int i, iSpec; | ^ CHESS.cpp:234:10: warning: unused variable 'iSpec' [-Wunused-variable] 234 | int i, iSpec; | ^~~~~ CHESS.cpp:242:10: warning: unused variable 'ToxBiStep' [-Wunused-variable] 242 | double ToxBiStep; | ^~~~~~~~~ CHESS.cpp:594:25: warning: 'ToxBracket' may be used uninitialized [-Wmaybe-uninitialized] 594 | if (!ToxBracket && (std::signbit(ToxResid) != std::signbit(LoToxResid))) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CHESS.cpp:239:8: note: 'ToxBracket' was declared here 239 | bool ToxBracket; | ^~~~~~~~~~ CHESS.cpp:642:46: warning: 'LoMeConc' may be used uninitialized [-Wmaybe-uninitialized] 642 | ToxFPStep = LoMeConc + (HiMeConc - LoMeConc) * LoToxResid / (LoToxResid - HiToxResid) * 1.1; | ~~~~~~~~~~^~~~~~~~~~~ CHESS.cpp:237:10: note: 'LoMeConc' was declared here 237 | double LoMeConc, HiMeConc; | ^~~~~~~~ CHESS.cpp:630:23: warning: 'HiMeConc' may be used uninitialized [-Wmaybe-uninitialized] 630 | ToxFPStep = LoMeConc + (HiMeConc - LoMeConc) * LoToxResid / (LoToxResid - HiToxResid) * 1.1; | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ CHESS.cpp:237:20: note: 'HiMeConc' was declared here 237 | double LoMeConc, HiMeConc; | ^~~~~~~~ In file included from D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include/Rcpp/platform/compiler.h:100, from D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include/Rcpp/r/headers.h:66, from D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include/RcppCommon.h:30, from D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include/Rcpp.h:27, from CHESS.cpp:1: In function 'constexpr bool std::signbit(double)', inlined from 'Rcpp::List CHESS(Rcpp::String, double, int, bool, int, Rcpp::CharacterVector, Rcpp::NumericVector, int, Rcpp::CharacterVector, Rcpp::CharacterVector, Rcpp::NumericVector, int, Rcpp::CharacterVector, Rcpp::CharacterVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::CharacterVector, bool, int, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, double, double, bool, Rcpp::String, int, int, Rcpp::IntegerVector, double)' at CHESS.cpp:594:67: D:/rtools44/x86_64-w64-mingw32.static.posix/lib/gcc/x86_64-w64-mingw32.static.posix/13.2.0/include/c++/cmath:1226:29: warning: 'LoToxResid' may be used uninitialized [-Wmaybe-uninitialized] 1226 | { return __builtin_signbit(__x); } | ~~~~~~~~~~~~~~~~~^~~~~ CHESS.cpp: In function 'Rcpp::List CHESS(Rcpp::String, double, int, bool, int, Rcpp::CharacterVector, Rcpp::NumericVector, int, Rcpp::CharacterVector, Rcpp::CharacterVector, Rcpp::NumericVector, int, Rcpp::CharacterVector, Rcpp::CharacterVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::IntegerMatrix, Rcpp::IntegerVector, Rcpp::CharacterVector, bool, int, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, double, double, bool, Rcpp::String, int, int, Rcpp::IntegerVector, double)': CHESS.cpp:238:10: note: 'LoToxResid' was declared here 238 | double LoToxResid, HiToxResid; | ^~~~~~~~~~ CHESS.cpp:630:85: warning: 'HiToxResid' may be used uninitialized [-Wmaybe-uninitialized] 630 | ToxFPStep = LoMeConc + (HiMeConc - LoMeConc) * LoToxResid / (LoToxResid - HiToxResid) * 1.1; | ~~~~~~~~~~~~^~~~~~~~~~~~~ CHESS.cpp:238:22: note: 'HiToxResid' was declared here 238 | double LoToxResid, HiToxResid; | ^~~~~~~~~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CHESSIter.cpp -o CHESSIter.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcActivityCoef.cpp -o CalcActivityCoef.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcChargeBalance.cpp -o CalcChargeBalance.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcDonnanLayer.cpp -o CalcDonnanLayer.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcIonicStrength.cpp -o CalcIonicStrength.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcIonicStrengthEffects.cpp -o CalcIonicStrengthEffects.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcIterationTotalMoles.cpp -o CalcIterationTotalMoles.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcIterationTotals.cpp -o CalcIterationTotals.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcResidAndError.cpp -o CalcResidAndError.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcResidualList.cpp -o CalcResidualList.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcSpecConc.cpp -o CalcSpecConc.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcStep.cpp -o CalcStep.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CalcWHAMSpecCharge.cpp -o CalcWHAMSpecCharge.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c CompUpdate.cpp -o CompUpdate.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c InitialGuess.cpp -o InitialGuess.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Jacobian.cpp -o Jacobian.o Jacobian.cpp: In function 'Rcpp::NumericMatrix Jacobian(int, int, Rcpp::CharacterVector, Rcpp::NumericVector, Rcpp::IntegerMatrix, Rcpp::NumericVector, Rcpp::IntegerVector, Rcpp::NumericVector, Rcpp::CharacterVector, Rcpp::IntegerVector, Rcpp::NumericVector, double, bool, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, Rcpp::NumericVector, double, double, Rcpp::NumericVector, int, Rcpp::IntegerVector, int, int, Rcpp::IntegerVector, bool)': Jacobian.cpp:250:22: warning: 'iHS' may be used uninitialized [-Wmaybe-uninitialized] 250 | Sum2 = dZhdC(iHS, iComp2) * HumicTerm[iHS]; | ^~~ Jacobian.cpp:68:30: note: 'iHS' was declared here 68 | int iComp1, iComp2, iSpec, iHS; | ^~~ g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MaxCompError.cpp -o MaxCompError.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c NumericalJacobian.cpp -o NumericalJacobian.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppArmaHelper.cpp -o RcppArmaHelper.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c SimpleAdjustComp.cpp -o SimpleAdjustComp.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c TempCorrection.cpp -o TempCorrection.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c UpdateTotals.cpp -o UpdateTotals.o g++ -std=gnu++11 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANincoming/R-devel/lib/Rcpp/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppArmadillo/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c UpdateTotalsList.cpp -o UpdateTotalsList.o g++ -shared -s -static-libgcc -o BLMEngineInR.dll tmp.def AdjustForToxMode.o AdjustForWHAM.o CHESS.o CHESSIter.o CalcActivityCoef.o CalcChargeBalance.o CalcDonnanLayer.o CalcIonicStrength.o CalcIonicStrengthEffects.o CalcIterationTotalMoles.o CalcIterationTotals.o CalcResidAndError.o CalcResidualList.o CalcSpecConc.o CalcStep.o CalcWHAMSpecCharge.o CompUpdate.o InitialGuess.o Jacobian.o MaxCompError.o NumericalJacobian.o RcppArmaHelper.o RcppExports.o SimpleAdjustComp.o TempCorrection.o UpdateTotals.o UpdateTotalsList.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-BLMEngineInR/00new/BLMEngineInR/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BLMEngineInR)