* installing *source* package ‘BLMEngineInR’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 18.1.8 (1+b1)’
using C++11
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c AdjustForToxMode.cpp -o AdjustForToxMode.o
In file included from AdjustForToxMode.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
AdjustForToxMode.cpp:59:26: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
   59 |   CompError[MetalComp] = abs(Resid[MetalComp] / CATarget);
      |                          ^
AdjustForToxMode.cpp:59:26: note: use function 'std::abs' instead
   59 |   CompError[MetalComp] = abs(Resid[MetalComp] / CATarget);
      |                          ^~~
      |                          std::abs
AdjustForToxMode.cpp:81:14: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
   81 |   ToxError = abs(ToxResid) / CATarget;
      |              ^
AdjustForToxMode.cpp:81:14: note: use function 'std::abs' instead
   81 |   ToxError = abs(ToxResid) / CATarget;
      |              ^~~
      |              std::abs
3 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c AdjustForWHAM.cpp -o AdjustForWHAM.o
In file included from AdjustForWHAM.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
AdjustForWHAM.cpp:128:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  128 |       TotMoles(iComp) = abs(WHAMSpecCharge(iHA)) * HumicSubstGramsPerLiter(iHA);
      |                         ^
AdjustForWHAM.cpp:128:25: note: use function 'std::abs' instead
  128 |       TotMoles(iComp) = abs(WHAMSpecCharge(iHA)) * HumicSubstGramsPerLiter(iHA);
      |                         ^~~
      |                         std::abs
AdjustForWHAM.cpp:131:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  131 |       TotMoles(iComp) = abs(WHAMSpecCharge(iFA)) * HumicSubstGramsPerLiter(iFA);
      |                         ^
AdjustForWHAM.cpp:131:25: note: use function 'std::abs' instead
  131 |       TotMoles(iComp) = abs(WHAMSpecCharge(iFA)) * HumicSubstGramsPerLiter(iFA);
      |                         ^~~
      |                         std::abs
AdjustForWHAM.cpp:353:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  353 |       TotMoles[iComp] = abs(WHAMSpecCharge[iHA]) * HumicSubstGramsPerLiter[iHA];
      |                         ^
AdjustForWHAM.cpp:353:25: note: use function 'std::abs' instead
  353 |       TotMoles[iComp] = abs(WHAMSpecCharge[iHA]) * HumicSubstGramsPerLiter[iHA];
      |                         ^~~
      |                         std::abs
AdjustForWHAM.cpp:356:25: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  356 |       TotMoles[iComp] = abs(WHAMSpecCharge[iFA]) * HumicSubstGramsPerLiter[iFA];
      |                         ^
AdjustForWHAM.cpp:356:25: note: use function 'std::abs' instead
  356 |       TotMoles[iComp] = abs(WHAMSpecCharge[iFA]) * HumicSubstGramsPerLiter[iFA];
      |                         ^~~
      |                         std::abs
5 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CHESS.cpp -o CHESS.o
In file included from CHESS.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
CHESS.cpp:233:10: warning: unused variable 'CalcCA' [-Wunused-variable]
  233 |   double CalcCA;
      |          ^~~~~~
CHESS.cpp:234:7: warning: unused variable 'i' [-Wunused-variable]
  234 |   int i, iSpec;
      |       ^
CHESS.cpp:234:10: warning: unused variable 'iSpec' [-Wunused-variable]
  234 |   int i, iSpec;
      |          ^~~~~
CHESS.cpp:242:10: warning: unused variable 'ToxBiStep' [-Wunused-variable]
  242 |   double ToxBiStep;
      |          ^~~~~~~~~
5 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CHESSIter.cpp -o CHESSIter.o
In file included from CHESSIter.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcActivityCoef.cpp -o CalcActivityCoef.o
In file included from CalcActivityCoef.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcChargeBalance.cpp -o CalcChargeBalance.o
In file included from CalcChargeBalance.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcDonnanLayer.cpp -o CalcDonnanLayer.o
In file included from CalcDonnanLayer.cpp:2:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcIonicStrength.cpp -o CalcIonicStrength.o
In file included from CalcIonicStrength.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcIonicStrengthEffects.cpp -o CalcIonicStrengthEffects.o
In file included from CalcIonicStrengthEffects.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcIterationTotalMoles.cpp -o CalcIterationTotalMoles.o
In file included from CalcIterationTotalMoles.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcIterationTotals.cpp -o CalcIterationTotals.o
In file included from CalcIterationTotals.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcResidAndError.cpp -o CalcResidAndError.o
In file included from CalcResidAndError.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcResidualList.cpp -o CalcResidualList.o
In file included from CalcResidualList.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
CalcResidualList.cpp:123:33: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  123 |      CompError(MetalComp - 1) = abs(Resid(MetalComp - 1) / CATarget);
      |                                 ^
CalcResidualList.cpp:123:33: note: use function 'std::abs' instead
  123 |      CompError(MetalComp - 1) = abs(Resid(MetalComp - 1) / CATarget);
      |                                 ^~~
      |                                 std::abs
2 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcSpecConc.cpp -o CalcSpecConc.o
In file included from CalcSpecConc.cpp:2:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcStep.cpp -o CalcStep.o
In file included from CalcStep.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CalcWHAMSpecCharge.cpp -o CalcWHAMSpecCharge.o
In file included from CalcWHAMSpecCharge.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c CompUpdate.cpp -o CompUpdate.o
In file included from CompUpdate.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c InitialGuess.cpp -o InitialGuess.o
In file included from InitialGuess.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c Jacobian.cpp -o Jacobian.o
In file included from Jacobian.cpp:2:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
Jacobian.cpp:117:55: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
  117 |                   (WHAMSpecCharge[iHS] * (1 + wKZED * abs(WHAMSpecCharge[iHS])));
      |                                                       ^
Jacobian.cpp:117:55: note: use function 'std::abs' instead
  117 |                   (WHAMSpecCharge[iHS] * (1 + wKZED * abs(WHAMSpecCharge[iHS])));
      |                                                       ^~~
      |                                                       std::abs
2 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c MaxCompError.cpp -o MaxCompError.o
In file included from MaxCompError.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c NumericalJacobian.cpp -o NumericalJacobian.o
In file included from NumericalJacobian.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c RcppArmaHelper.cpp -o RcppArmaHelper.o
In file included from RcppArmaHelper.cpp:5:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
RcppArmaHelper.cpp:123:7: warning: variable 'n_zero' set but not used [-Wunused-but-set-variable]
  123 |   int n_zero = 0;
      |       ^
2 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
In file included from RcppExports.cpp:4:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo.h:29:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:25:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c SimpleAdjustComp.cpp -o SimpleAdjustComp.o
In file included from SimpleAdjustComp.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
SimpleAdjustComp.cpp:31:16: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
   31 |   CompErrori = abs(TotMolesi - CalcTotMolesi) / TotMolesi;
      |                ^
SimpleAdjustComp.cpp:31:16: note: use function 'std::abs' instead
   31 |   CompErrori = abs(TotMolesi - CalcTotMolesi) / TotMolesi;
      |                ^~~
      |                std::abs
SimpleAdjustComp.cpp:55:18: warning: using integer absolute value function 'abs' when argument is of floating point type [-Wabsolute-value]
   55 |     CompErrori = abs(TotMolesi - CalcTotMolesi) / TotMolesi;
      |                  ^
SimpleAdjustComp.cpp:55:18: note: use function 'std::abs' instead
   55 |     CompErrori = abs(TotMolesi - CalcTotMolesi) / TotMolesi;
      |                  ^~~
      |                  std::abs
3 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c TempCorrection.cpp -o TempCorrection.o
In file included from TempCorrection.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
TempCorrection.cpp:39:8: warning: use of bitwise '&' with boolean operands [-Wbitwise-instead-of-logical]
   39 |           if ((SpecTempKelvin(iSpec) != 0) & (SpecDeltaH(iSpec) != 0)) {
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                                            &&
TempCorrection.cpp:39:8: note: cast one or both operands to int to silence this warning
2 warnings generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c UpdateTotals.cpp -o UpdateTotals.o
In file included from UpdateTotals.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -DR_NO_REMAP -c UpdateTotalsList.cpp -o UpdateTotalsList.o
In file included from UpdateTotalsList.cpp:1:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp.h:27:
In file included from /home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/RcppCommon.h:30:
/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include/Rcpp/r/headers.h:26:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
   26 | #define R_NO_REMAP
      |         ^
<command line>:4:9: note: previous definition is here
    4 | #define R_NO_REMAP 1
      |         ^
1 warning generated.
clang++-18 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BLMEngineInR.so AdjustForToxMode.o AdjustForWHAM.o CHESS.o CHESSIter.o CalcActivityCoef.o CalcChargeBalance.o CalcDonnanLayer.o CalcIonicStrength.o CalcIonicStrengthEffects.o CalcIterationTotalMoles.o CalcIterationTotals.o CalcResidAndError.o CalcResidualList.o CalcSpecConc.o CalcStep.o CalcWHAMSpecCharge.o CompUpdate.o InitialGuess.o Jacobian.o MaxCompError.o NumericalJacobian.o RcppArmaHelper.o RcppExports.o SimpleAdjustComp.o TempCorrection.o UpdateTotals.o UpdateTotalsList.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-18/lib -lFortran_main -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN/BLMEngineInR.Rcheck/00LOCK-BLMEngineInR/00new/BLMEngineInR/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (BLMEngineInR)