R Under development (unstable) (2026-05-15 r90061 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(BIGr) > > test_check("BIGr") --- Parentage Assignment Summary --- Total progeny evaluated: 1 LOW_MARKERS : 1 (100.0%) Min markers threshold : 10 Error threshold : 5 % --- Parentage Assignment Results --- Progeny Male_Parent Female_Parent Mendelian_Error_Pct Markers_Tested 1: child1 S1 D1 0.00 5 Assignment_Status 1: LOW_MARKERS ID Concordance 1 ID1 91.67% 2 ID10 95.45% 3 ID11 90% 4 ID12 94.74% 5 ID13 100% 6 ID14 100% 7 ID15 100% 8 ID16 100% 9 ID17 100% 10 ID18 89.47% 11 ID19 93.75% 12 ID2 95.45% 13 ID20 100% 14 ID3 100% 15 ID4 100% 16 ID5 100% 17 ID6 73.68% 18 ID7 81.82% 19 ID8 100% 20 ID9 100% Scanning file to determine attributes. File attributes: meta lines: 9 header_line: 10 variant count: 33 column count: 19 Meta line 9 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 33 Character matrix gt cols: 19 skip: 0 nrows: 33 row_num: 0 Processed variant: 33 All variants processed Scanning file to determine attributes. File attributes: meta lines: 9 header_line: 10 variant count: 32 column count: 19 Meta line 9 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 32 Character matrix gt cols: 19 skip: 0 nrows: 32 row_num: 0 Processed variant: 32 All variants processed Scanning file to determine attributes. File attributes: meta lines: 9 header_line: 10 variant count: 28 column count: 19 Meta line 9 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 28 Character matrix gt cols: 19 skip: 0 nrows: 28 row_num: 0 Processed variant: 28 All variants processed Scanning file to determine attributes. File attributes: meta lines: 14 header_line: 15 variant count: 499 column count: 159 Meta line 14 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 499 Character matrix gt cols: 159 skip: 0 nrows: 499 row_num: 0 Processed variant: 499 All variants processed Scanning file to determine attributes. File attributes: meta lines: 14 header_line: 15 variant count: 499 column count: 159 Meta line 14 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 499 Character matrix gt cols: 159 skip: 0 nrows: 499 row_num: 0 Processed variant: 499 All variants processed Scanning file to determine attributes. File attributes: meta lines: 14 header_line: 15 variant count: 499 column count: 159 Meta line 14 read in. All meta lines processed. gt matrix initialized. Character matrix gt created. Character matrix gt rows: 499 Character matrix gt cols: 159 skip: 0 nrows: 499 row_num: 0 Processed variant: 499 All variants processed [ FAIL 0 | WARN 1 | SKIP 4 | PASS 255 ] ══ Skipped tests (4) ═══════════════════════════════════════════════════════════ • On CRAN (3): 'test-check_madc_sanity.R:2:3', 'test-madc2vcf_all.R:162:3', 'test-madc2vcf_targets.R:154:3' • {VariantAnnotation} is not installed (1): 'test-madc2vcf_multi.R:10:3' [ FAIL 0 | WARN 1 | SKIP 4 | PASS 255 ] > > proc.time() user system elapsed 22.00 4.23 110.54