R Under development (unstable) (2025-05-13 r88200 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(BIGr)
> 
> test_check("BIGr")
The Ref_0001 sequence had to be added for: 0 tags
The Alt_0002 sequence had to be added for: 1 tags
Tags discarded due to lack of Ref_0001 sequence: 0 tags
Tags discarded due to lack of Alt_0002 sequence: 0 tags
Number of tags removed because of low alignment score: 0 tags
Number of tags removed because of N in the alternative sequence: 0 tags
[1] "SNP removed because presented more than one allele: 0"
The Ref_0001 sequence had to be added for: 0 tags
The Alt_0002 sequence had to be added for: 1 tags
Tags discarded due to lack of Ref_0001 sequence: 0 tags
Tags discarded due to lack of Alt_0002 sequence: 0 tags
Number of tags removed because of low alignment score: 0 tags
Number of tags removed because of N in the alternative sequence: 0 tags
[1] "SNP removed because presented more than one allele: 1"
Scanning file to determine attributes.
File attributes:
  meta lines: 9
  header_line: 10
  variant count: 33
  column count: 19

Meta line 9 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
  Character matrix gt rows: 33
  Character matrix gt cols: 19
  skip: 0
  nrows: 33
  row_num: 0

Processed variant: 33
All variants processed
Scanning file to determine attributes.
File attributes:
  meta lines: 9
  header_line: 10
  variant count: 32
  column count: 19

Meta line 9 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
  Character matrix gt rows: 32
  Character matrix gt cols: 19
  skip: 0
  nrows: 32
  row_num: 0

Processed variant: 32
All variants processed
The Ref_0001 sequence had to be added for: 0 tags
The Alt_0002 sequence had to be added for: 0 tags
Tags discarded due to lack of Ref_0001 sequence: 0 tags
Tags discarded due to lack of Alt_0002 sequence: 1 tags
Number of tags removed because of low alignment score: 0 tags
Number of tags removed because of N in the alternative sequence: 0 tags
[1] "SNP removed because presented more than one allele: 0"
Scanning file to determine attributes.
File attributes:
  meta lines: 9
  header_line: 10
  variant count: 28
  column count: 19

Meta line 9 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
  Character matrix gt rows: 28
  Character matrix gt cols: 19
  skip: 0
  nrows: 28
  row_num: 0

Processed variant: 28
All variants processed
Scanning file to determine attributes.
File attributes:
  meta lines: 14
  header_line: 15
  variant count: 499
  column count: 159

Meta line 14 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
  Character matrix gt rows: 499
  Character matrix gt cols: 159
  skip: 0
  nrows: 499
  row_num: 0

Processed variant: 499
All variants processed
Scanning file to determine attributes.
File attributes:
  meta lines: 14
  header_line: 15
  variant count: 499
  column count: 159

Meta line 14 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
  Character matrix gt rows: 499
  Character matrix gt cols: 159
  skip: 0
  nrows: 499
  row_num: 0

Processed variant: 499
All variants processed
Scanning file to determine attributes.
File attributes:
  meta lines: 14
  header_line: 15
  variant count: 499
  column count: 159

Meta line 14 read in.
All meta lines processed.
gt matrix initialized.
Character matrix gt created.
  Character matrix gt rows: 499
  Character matrix gt cols: 159
  skip: 0
  nrows: 499
  row_num: 0

Processed variant: 499
All variants processed
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 61 ]
> 
> proc.time()
   user  system elapsed 
  27.51    6.06  103.23