R version 4.5.0 beta (2025-04-01 r88091 ucrt) -- "How About a Twenty-Six"
Copyright (C) 2025 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
> 
> library(testthat)
> library(BGmisc)
> 
> test_check("BGmisc")
No individuals with more than two parents detected.
No duplicate edges detected.
No cyclic relationships detected.
No individuals with more than two parents detected.
No duplicate edges detected.
Cyclic relationships detected:
[1] "5" "7"
Individuals with more than two parents detected: 7
Duplicate edges detected:
     [,1] [,2]
[1,] "4"  "7" 
No cyclic relationships detected.
Individuals with more than two parents detected: 1
Duplicate edges detected:
     [,1]  [,2]
[1,] "101" "1" 
[2,] "102" "1" 
No cyclic relationships detected.
Step 1: Checking how many sexes/genders...
2 unique values found.
Unique values: 1, 0
Checks Made:
$sex_unique
[1] 1 0

$sex_length
[1] 2

$all_sex_dad
[1] "1"

$all_sex_mom
[1] "0"

$most_frequent_sex_dad
[1] "1"

$most_frequent_sex_mom
[1] "0"

Step 1: Checking how many sexes/genders...
3 unique values found.
Unique values: 5, 0, 1
Checks Made:
$sex_unique
[1] 5 0 1

$sex_length
[1] 3

$all_sex_dad
[1] "1" "5"

$all_sex_mom
[1] "0"

$most_frequent_sex_dad
[1] "1"

$most_frequent_sex_mom
[1] "0"

$ID_female_dads
[1] 1

$ID_child_female_dads
[1] 6

Step 1: Checking how many sexes/genders...
3 unique values found.
Unique values: 5, 0, 1
Step 2: Attempting to repair sex coding...
Changes Made:
list()
Step 1: Checking how many sexes/genders...
3 unique values found.
Unique values: 1, 0, 5
Checks Made:
$sex_unique
[1] 1 0 5

$sex_length
[1] 3

$all_sex_dad
[1] "1"

$all_sex_mom
[1] "0" "5"

$most_frequent_sex_dad
[1] "1"

$most_frequent_sex_mom
[1] "0"

$ID_male_moms
[1] 3

$ID_child_male_moms
[1] 6

Your scale might be reverse coded because you have negative correlations. Please check your data. 
Component model is identified.
Component model is not identified.
Non-identified parameters are  A, C 
Component model is not identified.
Non-identified parameters are  Comp1, Comp2 
'as(<dsCMatrix>, "dgCMatrix")' is deprecated.
Use 'as(., "generalMatrix")' instead.
See help("Deprecated") and help("Matrix-deprecated").
[1] 1
Only one matrix is present
Did not plot the following people: 10032 
[1] "Reading file: D:\\temp\\2025_04_03_00_40_17_9463\\RtmpCYQNHH\\file2e418783c49e7.ged"
[1] "File is 18 lines long"
[1] "Parsing GEDCOM file"
[1] "File has 2 people"
[1] "Processing parents"
[1] "Combining Duplicate Columns"
[1] "Removing empty columns"
[1] "Reading file: D:\\temp\\2025_04_03_00_40_17_9463\\RtmpCYQNHH\\file2e418755d2144.ged"
[1] "File is 8 lines long"
[1] "Parsing GEDCOM file"
[1] "File has 2 people"
[1] "Processing parents"
[1] "Combining Duplicate Columns"
[1] "Removing empty columns"
[1] "Reading file: D:\\temp\\2025_04_03_00_40_17_9463\\RtmpCYQNHH\\file2e41815425071.ged"
[1] "File is 3 lines long"
[1] "Parsing GEDCOM file"
[1] "File has 1 people"
[1] "Processing parents"
[1] "Combining Duplicate Columns"
[1] "Removing empty columns"
[1] "Reading file: D:\\temp\\2025_04_03_00_40_17_9463\\RtmpCYQNHH\\file2e4187bb3e37.ged"
[1] "File is 5 lines long"
[1] "Parsing GEDCOM file"
[1] "File has 1 people"
[1] "Processing parents"
[1] "Combining Duplicate Columns"
[1] "Removing empty columns"
[1] "Slimming down the data frame"
The input pedigree is not in the same format as the output of simulatePedigree
twin1 1 
twin2 2 
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 374 ]
> 
> proc.time()
   user  system elapsed 
   5.32    0.68    6.00