* installing *source* package 'BGGM' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs using C++ compiler: 'g++.exe (GCC) 13.2.0' using C++17 g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppDist/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"D:/RCompile/recent/R/include" -DNDEBUG -I'D:/RCompile/CRANpkg/lib/4.5/Rcpp/include' -I'D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppDist/include' -I'D:/RCompile/CRANpkg/lib/4.5/RcppProgress/include' -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -fopenmp -I../inst/include -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bggm_fast.cpp -o bggm_fast.o bggm_fast.cpp: In function 'Rcpp::List trunc_mvn(arma::mat, arma::mat, arma::mat, arma::mat, arma::rowvec)': bggm_fast.cpp:714:47: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::subview; out_eT = int; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 714 | a2.row(i) = a.col(arma::conv_to::from(y.row(i))); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo:472, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57, from D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/RcppArmadillo.h:29, from bggm_fast.cpp:3: D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ bggm_fast.cpp:716:47: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::subview; out_eT = int; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 716 | b2.row(i) = b.col(arma::conv_to::from(y.row(i))); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ bggm_fast.cpp: In function 'Rcpp::List ppc_helper_nodewise_fast(arma::cube, int, int, int)': bggm_fast.cpp:1954:59: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::Mat; out_eT = float; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 1954 | kl(s, j) = (KL_univariate(arma::conv_to::from(var_1), arma::conv_to::from(var_2)) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ bggm_fast.cpp:1954:94: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::Mat; out_eT = float; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 1954 | kl(s, j) = (KL_univariate(arma::conv_to::from(var_1), arma::conv_to::from(var_2)) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ bggm_fast.cpp:1955:49: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::Mat; out_eT = float; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 1955 | KL_univariate(arma::conv_to::from(var_2), arma::conv_to::from(var_1))) * 0.5; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ bggm_fast.cpp:1955:84: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::Mat; out_eT = float; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 1955 | KL_univariate(arma::conv_to::from(var_2), arma::conv_to::from(var_1))) * 0.5; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ bggm_fast.cpp: In function 'float correlation(arma::mat, arma::mat)': bggm_fast.cpp:2084:42: warning: 'static out_eT arma::conv_to::from(const arma::Base&, const typename arma::arma_not_cx::result*) [with in_eT = double; T1 = arma::Mat; out_eT = float; typename arma::arma_not_cx::result = double]' is deprecated: use as_scalar() instead [-Wdeprecated-declarations] 2084 | float cors = arma::conv_to::from(cor_nets); | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ D:/RCompile/CRANincoming/R-devel/lib/RcppArmadillo/include/armadillo_bits/fn_conv_to.hpp:51:1: note: declared here 51 | conv_to::from(const Base& in, const typename arma_not_cx::result* junk) | ^~~~~~~~~~~~~~~ g++ -shared -s -static-libgcc -o BGGM.dll tmp.def RcppExports.o bggm_fast.o -fopenmp -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-BGGM/00new/BGGM/libs/x64 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BGGM)