R Under development (unstable) (2024-11-30 r87409 ucrt) -- "Unsuffered Consequences"
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> library(testthat)
> library(BFpack)
Loading required package: bain
Registered S3 methods overwritten by 'BFpack':
  method               from
  get_estimates.lm     bain
  get_estimates.t_test bain

This is BFpack 1.4.0.
Updates on default settings:
- For standard (exploratory) tests, the default prior probability for a zero, negative,
and positive effect are 0.5, 0.25, and 0.25, respectively. The previous default was 1/3 for each
hypothesis. Changing these prior probabilities can be done using the argument 'prior.hyp.explo'.
- For linear regression, ANOVA, t-tests, the fractional Bayes factor ('FBF') is the new default.
To change this to the adjusted fractional Bayes factor (the previous default), users can set
the argument: BF.type='AFBF'.
> 
> test_check("BFpack")
Call:
BF.lm(x = lm_conf, hypothesis = hypothesis, prior.hyp.explo = prior.hyp.explo, 
    prior.hyp.conf = prior.hyp.conf, prior.hyp = prior.hyp, complement = complement, 
    log = logIN, cov.prob = cov.prob, BF.type = BF.type)

Bayesian hypothesis test
Type: exploratory
Object: lm
Parameter: regression coefficients
Method: generalized adjusted fractional Bayes factors

Posterior probabilities of the hypotheses

Model parameters:
   Pr(=5) Pr(<5) Pr(>5)
mu  0.513  0.471  0.016

Bayesian hypothesis test
Type: confirmatory
Object: lm
Parameter: regression coefficients
Method: generalized adjusted fractional Bayes factors

Posterior probabilities of the hypotheses
   Pr(hypothesis|data)
H1               0.329
H2               0.650
H3               0.022

Evidence matrix (BFs):
      H1    H2     H3
H1 1.000 0.253  7.508
H2 3.954 1.000 29.691
H3 0.133 0.034  1.000

Specification table:
   comp_E comp_O fit_E fit_O  BF_E  BF_O    BF   PHP
H1  0.195  1.000 0.205  1.00 1.053 1.000 1.053 0.329
H2  1.000  0.214 1.000  0.89 1.000 4.166 4.166 0.650
H3  1.000  0.786 1.000  0.11 1.000 0.140 0.140 0.022

Hypotheses:
H1: mu=5
H2: mu<6&mu>4
H3: complement
[ FAIL 0 | WARN 0 | SKIP 14 | PASS 114 ]

══ Skipped tests (14) ══════════════════════════════════════════════════════════
• On CRAN (14): 'test_BFcortest.R:77:3', 'test_BFergm.R:6:3',
  'test_BFergm.R:42:3', 'test_BFmeta.R:13:3', 'test_BFmlm.R:43:3',
  'test_anova_manova.R:27:3', 'test_anova_manova.R:40:3',
  'test_anova_manova.R:79:3', 'test_anova_manova.R:95:3',
  'test_application4_BF.mlm_regression.R:3:3',
  'test_application6_BF.mlm_correlations.R:4:3',
  'test_application7_BF.lmerMod.R:4:3', 'test_application7_BF.lmerMod.R:36:3',
  'test_ttest.R:108:3'

[ FAIL 0 | WARN 0 | SKIP 14 | PASS 114 ]
> 
> proc.time()
   user  system elapsed 
  35.90    1.93   37.82