* using log directory ‘/srv/hornik/tmp/CRAN/BFI.Rcheck’
* using R Under development (unstable) (2024-07-02 r86867)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (1+b1)
    Debian flang-new version 18.1.8 (1+b1)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘BFI/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BFI’ version ‘2.0.1’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [5s/7s] NOTE
Maintainer: ‘Hassan Pazira <hassan.pazira@radboudumc.nl>’

Possibly misspelled words in DESCRIPTION:
  Massa (16:370)
  Weijers (16:377)

Found the following (possibly) invalid DOIs:
  DOI: https://hassanpazira.github.io/BFI/
    From: inst/CITATION
    Status: 404
    Message: Not Found
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘BFI’ can be installed ... [3s/3s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [6s/6s] OK
* checking Rd files ... [0s/0s] NOTE
checkRd: (-1) surv.simulate.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{gen_data_from}{a description of the distribution from which the time to event is generated. This is a character string and can be {exponential} (\dQuote{exp}), {Weibull} (\dQuote{weibul}), or \code{Gompertz} (\dQuote{gomp}). Can be abbreviated. By default, the \code{exponential} distribution is used.}
       |                                                                                                                                         ^
checkRd: (-1) surv.simulate.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{gen_data_from}{a description of the distribution from which the time to event is generated. This is a character string and can be {exponential} (\dQuote{exp}), {Weibull} (\dQuote{weibul}), or \code{Gompertz} (\dQuote{gomp}). Can be abbreviated. By default, the \code{exponential} distribution is used.}
       |                                                                                                                                                                       ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [27s/27s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
surv.simulate  9.419  0.000   9.419
hazards.fun    6.376  0.009   6.384
bfi            5.555  0.007   5.562
MAP.estimation 5.056  0.000   5.055
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] OK
  Running ‘spelling.R’ [0s/0s]
  Running ‘testthat.R’ [0s/0s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [9s/10s] OK
* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 NOTEs