downloading reverse dependencies ‘aslib’, ‘BatchExperiments’, ‘BatchJobs’, ‘BlockCov’, ‘cmaesr’, ‘delayed’, ‘DynNom’, ‘ecr’, ‘EFAfactors’, ‘EstimationTools’, ‘fail’, ‘farff’, ‘flacco’, ‘grapherator’, ‘ig.degree.betweenness’, ‘latentFactoR’, ‘llama’, ‘mbsts’, ‘mcMST’, ‘MicrobiomeStat’, ‘mlr’, ‘mlrCPO’, ‘mlrMBO’, ‘nandb’, ‘OpenML’, ‘parallelMap’, ‘ParamHelpers’, ‘PLreg’, ‘RBPcurve’, ‘RelDists’, ‘RivRetrieve’, ‘robustbetareg’, ‘SHAPforxgboost’, ‘smoof’, ‘tspmeta’, ‘tuneRanger’, ‘validata’, ‘binpackr’, ‘wrMisc’ trying URL 'file:///data/Repositories/CRAN/src/contrib/aslib_0.1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/BatchExperiments_1.4.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/BatchJobs_1.10.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/BlockCov_0.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cmaesr_1.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/delayed_0.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/DynNom_5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ecr_2.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EFAfactors_1.2.4.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/EstimationTools_4.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/fail_1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/farff_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/flacco_1.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/grapherator_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ig.degree.betweenness_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/latentFactoR_0.0.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/llama_0.10.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mbsts_3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mcMST_1.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MicrobiomeStat_1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlr_2.19.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlrCPO_0.3.8.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/mlrMBO_1.1.5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/nandb_2.1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/OpenML_1.12.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/parallelMap_1.5.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/ParamHelpers_1.14.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/PLreg_0.4.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RBPcurve_1.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RelDists_1.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RivRetrieve_0.1.6.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/robustbetareg_0.3.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SHAPforxgboost_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/smoof_1.6.0.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tspmeta_1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tuneRanger_0.8.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/validata_0.1.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/binpackr_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/wrMisc_1.15.4.tar.gz' installing dependencies ‘AdequacyModel’, ‘akima’, ‘autoimage’, ‘autothresholdr’, ‘BatchJobs’, ‘BBmisc’, ‘brnn’, ‘bst’, ‘care’, ‘cmaes’, ‘cmaesr’, ‘compare’, ‘crs’, ‘ddpcr’, ‘deepnet’, ‘detrendr’, ‘eaf’, ‘ecr’, ‘EGAnet’, ‘EstimationTools’, ‘evtree’, ‘farff’, ‘FDboost’, ‘filesstrings’, ‘framecleaner’, ‘frbs’, ‘FSelector’, ‘FSelectorRcpp’, ‘fspe’, ‘gamlss.cens’, ‘gaussquad’, ‘grapherator’, ‘hedgehog’, ‘ijtiff’, ‘irace’, ‘laGP’, ‘llama’, ‘mixdist’, ‘mldr’, ‘mRMRe’, ‘OpenML’, ‘pamr’, ‘plot3Drgl’, ‘praznik’, ‘rFerns’, ‘rotationForest’, ‘RRF’, ‘RSelenium’, ‘rstackdeque’, ‘rucrdtw’, ‘sda’, ‘sendmailR’, ‘SimCorMultRes’, ‘som’, ‘sparseLDA’, ‘stepPlr’, ‘survAUC’, ‘tidyhydat’, ‘vsn’, ‘wrGraph’ also installing the dependencies ‘binman’, ‘affyio’, ‘gamboostLSS’, ‘wdman’, ‘affy’, ‘wrMisc’ begin installing package ‘binman’ begin installing package ‘affyio’ begin installing package ‘gamboostLSS’ begin installing package ‘wrMisc’ begin installing package ‘sendmailR’ begin installing package ‘rstackdeque’ begin installing package ‘compare’ begin installing package ‘plot3Drgl’ begin installing package ‘ddpcr’ begin installing package ‘SimCorMultRes’ begin installing package ‘autoimage’ begin installing package ‘gaussquad’ begin installing package ‘AdequacyModel’ begin installing package ‘EGAnet’ begin installing package ‘fspe’ begin installing package ‘brnn’ begin installing package ‘bst’ begin installing package ‘care’ begin installing package ‘crs’ begin installing package ‘cmaes’ begin installing package ‘deepnet’ begin installing package ‘evtree’ begin installing package ‘frbs’ begin installing package ‘FSelector’ begin installing package ‘FSelectorRcpp’ begin installing package ‘irace’ begin installing package ‘laGP’ begin installing package ‘mldr’ * installing *source* package ‘care’ ... ** this is package ‘care’ version ‘1.1.11’ ** package ‘care’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (care) begin installing package ‘mRMRe’ * installing *source* package ‘cmaes’ ... ** this is package ‘cmaes’ version ‘1.0-12’ ** package ‘cmaes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmaes) begin installing package ‘pamr’ * installing *source* package ‘sendmailR’ ... ** this is package ‘sendmailR’ version ‘1.4-0’ ** package ‘sendmailR’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sendmailR) begin installing package ‘praznik’ * installing *source* package ‘fspe’ ... ** this is package ‘fspe’ version ‘0.1.2’ ** package ‘fspe’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fspe) begin installing package ‘rFerns’ * installing *source* package ‘AdequacyModel’ ... ** this is package ‘AdequacyModel’ version ‘2.0.0’ ** package ‘AdequacyModel’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AdequacyModel) begin installing package ‘rotationForest’ * installing *source* package ‘rstackdeque’ ... ** this is package ‘rstackdeque’ version ‘1.1.1’ ** package ‘rstackdeque’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstackdeque) begin installing package ‘RRF’ * installing *source* package ‘SimCorMultRes’ ... ** this is package ‘SimCorMultRes’ version ‘1.9.0’ ** package ‘SimCorMultRes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (SimCorMultRes) begin installing package ‘rucrdtw’ * installing *source* package ‘deepnet’ ... ** this is package ‘deepnet’ version ‘0.2.1’ ** package ‘deepnet’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (deepnet) begin installing package ‘sda’ * installing *source* package ‘binman’ ... ** this is package ‘binman’ version ‘0.1.3’ ** package ‘binman’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (binman) begin installing package ‘sparseLDA’ * installing *source* package ‘gaussquad’ ... ** this is package ‘gaussquad’ version ‘1.0-3’ ** package ‘gaussquad’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gaussquad) begin installing package ‘stepPlr’ * installing *source* package ‘compare’ ... ** this is package ‘compare’ version ‘0.2-6’ ** package ‘compare’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (compare) begin installing package ‘survAUC’ * installing *source* package ‘brnn’ ... ** this is package ‘brnn’ version ‘0.9.4’ ** package ‘brnn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpspEfz2/R.INSTALL135ecc53af67ab/brnn/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -I. -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Lanczos.c -o Lanczos.o Lanczos.c: In function ‘extreme_eigenvalues’: Lanczos.c:191:5: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 191 | for (xx=0.0,zp=z,p0=zp+*n;zp::destroy() [with T = double]’: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘*this.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double rect_dist(TNT::Region2D >, TNT::Region2D >)’ at SomParam.h:11:19: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:12:40: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘TNT::Subscript find_winner(TNT::DMatrix&, TNT::Subscript, TNT::DMatrix&)’ at som.cc:16:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void visual(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&)’ at som.cc:57:36: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘int update(TNT::DMatrix&, TNT::DMatrix&, TNT::Subscript, double, TNT::DVector&)’ at som.cc:32:24: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘double qerror(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&)’ at som.cc:76:38: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘void som_top(TNT::DMatrix&, TNT::DMatrix&, TNT::DMatrix&, SomParam&, SomParam&, double*)’ at som.cc:108:1: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som_bat(SEXP, SEXP, SEXP, SEXP)’ at som.cc:225:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Vis.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Cord.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Code.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ In member function ‘void TNT::Fortran_Matrix::destroy() [with T = double]’, inlined from ‘TNT::Fortran_Matrix::~Fortran_Matrix() [with T = double]’ at tnt/fmat.h:211:16, inlined from ‘SEXPREC* som(SEXP, SEXP, SEXP)’ at som.cc:198:3: tnt/fmat.h:161:9: warning: ‘void operator delete [](void*)’ called on pointer ‘Data.TNT::Fortran_Matrix::col_’ with nonzero offset 8 [-Wfree-nonheap-object] 161 | delete [] (col_); | ^~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o som.so som.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmppeNNBA/R.INSTALL136ffd508be0d4/som/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-som/00new/som/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (som) * installing *source* package ‘frbs’ ... ** this is package ‘frbs’ version ‘3.2-0’ ** package ‘frbs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (frbs) * installing *source* package ‘evtree’ ... ** this is package ‘evtree’ version ‘1.0-8’ ** package ‘evtree’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSxVwza/R.INSTALL135ee41b887f/evtree/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c container.cpp -o container.o container.cpp: In member function ‘double Container::crossover(int)’: container.cpp:1120:8: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1120 | if(accept2 == 0) | ^~ container.cpp:1122:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1122 | if( accept2 >= 0){// new tree with "treeNumber2" is accepted | ^~ container.cpp:1130:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation] 1130 | if(accept1 == 0) | ^~ container.cpp:1132:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’ 1132 | if( accept1 >= 0){// new tree with "treeNumber1" is accepted | ^~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c node.cpp -o node.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c tree.cpp -o tree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c variable.cpp -o variable.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o evtree.so container.o node.o tree.o variable.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSxVwza/R.INSTALL135ee41b887f/evtree/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-evtree/00new/evtree/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (evtree) * installing *source* package ‘affyio’ ... ** this is package ‘affyio’ version ‘1.80.0’ ** package ‘affyio’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking how to run the C preprocessor... gcc-15 -E checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for main in -lz... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes checking for pthread_create in -lpthread... yes checking if we can use pthreads... yes checking if PTHREAD_STACK_MIN is defined... yes configure: Enabling threading for affyio configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp2rzCf7/R.INSTALL135e8f8c95d83/affyio/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c fread_functions.c -o fread_functions.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init_package.c -o init_package.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_abatch.c -o read_abatch.o read_abatch.c: In function ‘read_cel_file_intensities’: read_abatch.c:656:176: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:656:182: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 656 | Rprintf("Warning: found an empty line where not expected in %s.\nThis means that there is a cel intensity missing from the cel file.\nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:665:146: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:665:152: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:677:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:677:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:689:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:689:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_cel_file_stddev’: read_abatch.c:764:178: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:764:184: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 764 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:774:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:774:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 774 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:785:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:785:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 785 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:795:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:795:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 795 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:805:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:805:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 805 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_cel_file_npixels’: read_abatch.c:870:178: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:870:184: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 870 | Rprintf("Warning: found an empty line where not expected in %s.\n This means that there is a cel intensity missing from the cel file.\n Sucessfully read to cel intensity %d of %d expected\n", filename, i-1, i); | ~^ ~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:879:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:879:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 879 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:890:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:890:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 890 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:901:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:901:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 901 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:913:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:913:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 913 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:924:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:924:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 924 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_intensities’: read_abatch.c:1567:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1567:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1567 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1578:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1578:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1578 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1589:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1589:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1589 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_stddev’: read_abatch.c:1665:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1665:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1665 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1677:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1677:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1677 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1689:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1689:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1689 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1701:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1701:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1701 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘read_gzcel_file_npixels’: read_abatch.c:1769:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1769:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1769 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1780:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1780:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1780 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1791:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1791:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1791 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1801:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1801:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1801 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1811:145: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c:1811:151: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘size_t’ {aka ‘long unsigned int’} [-Wformat=] 1811 | Rprintf("Warning: found an incomplete line where not expected in %s.\nThe CEL file may be truncated. \nSucessfully read to cel intensity %d of %d expected\n", filename, i-1, rows); | ~^ ~~~~ | | | | int size_t {aka long unsigned int} | %ld read_abatch.c: In function ‘gzbinary_get_detailed_header_info’: read_abatch.c:3410:3: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 3410 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^ read_abatch.c:3410:65: note: length computed here 3410 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_abatch.c: In function ‘binary_get_detailed_header_info’: read_abatch.c:2661:3: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-truncation] 2661 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^ read_abatch.c:2661:65: note: length computed here 2661 | strncpy(header_info->AlgorithmParameters,my_header->alg_param,strlen(my_header->alg_param)-1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_bpmap.c -o read_bpmap.o read_bpmap.c: In function ‘ReadBPMAPFileIntoRList’: read_bpmap.c:849:39: warning: format ‘%s’ expects argument of type ‘char *’, but argument 2 has type ‘SEXP’ {aka ‘struct SEXPREC *’} [-Wformat=] 849 | error("Unable to open the file %s",filename); | ~^ ~~~~~~~~ | | | | | SEXP {aka struct SEXPREC *} | char * read_bpmap.c:698:27: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 698 | sprintf(buf, "%d", j+1); | ^ In file included from /usr/include/stdio.h:970, from /home/hornik/tmp/R/include/R.h:44, from read_bpmap.c:23: In function ‘sprintf’, inlined from ‘readBPMAPSeqIdPositionInfo’ at read_bpmap.c:698:4, inlined from ‘ReadBPMAPFileIntoRList’ at read_bpmap.c:873:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ read_bpmap.c: In function ‘ReadBPMAPFileIntoRList’: read_bpmap.c:655:27: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 655 | sprintf(buf, "%d", j+1); | ^ In function ‘sprintf’, inlined from ‘readBPMAPSeqIdPositionInfo’ at read_bpmap.c:655:4, inlined from ‘ReadBPMAPFileIntoRList’ at read_bpmap.c:873:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ read_bpmap.c: In function ‘ReadBPMAPFileIntoRList’: read_bpmap.c:603:25: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 603 | sprintf(buf, "%d", j+1); | ^ In function ‘sprintf’, inlined from ‘readBPMAPSeqIdPositionInfo’ at read_bpmap.c:603:2, inlined from ‘ReadBPMAPFileIntoRList’ at read_bpmap.c:873:3: /usr/include/x86_64-linux-gnu/bits/stdio2.h:30:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_cdf_xda.c -o read_cdf_xda.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_cdffile2.c -o read_cdffile2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_celfile_generic.c -o read_celfile_generic.o read_celfile_generic.c: In function ‘generic_get_detailed_header_info’: read_celfile_generic.c:272:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 272 | strncpy(header_info->AlgorithmParameters,"Percentile:",11); | ^ read_celfile_generic.c:294:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 294 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11); | ^ read_celfile_generic.c:315:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 315 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12); | ^ read_celfile_generic.c:336:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 336 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11); | ^ read_celfile_generic.c:357:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 357 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11); | ^ read_celfile_generic.c:378:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation] 378 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14); | ^ read_celfile_generic.c:399:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation] 399 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17); | ^ read_celfile_generic.c:420:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 420 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18); | ^ read_celfile_generic.c:441:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation] 441 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26); | ^ read_celfile_generic.c:464:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 464 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18); | ^ read_celfile_generic.c:488:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 488 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20); | ^ read_celfile_generic.c:510:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 510 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20); | ^ read_celfile_generic.c:532:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 532 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12); | ^ read_celfile_generic.c:553:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation] 553 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16); | ^ read_celfile_generic.c:575:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 575 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11); | ^ read_celfile_generic.c:597:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation] 597 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8); | ^ read_celfile_generic.c: In function ‘gzgeneric_get_detailed_header_info’: read_celfile_generic.c:1270:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1270 | strncpy(header_info->AlgorithmParameters,"Percentile:",11); | ^ read_celfile_generic.c:1292:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1292 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"CellMargin:",11); | ^ read_celfile_generic.c:1313:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 1313 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierHigh:",12); | ^ read_celfile_generic.c:1334:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1334 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"OutlierLow:",11); | ^ read_celfile_generic.c:1355:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1355 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"AlgVersion:",11); | ^ read_celfile_generic.c:1376:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 14 bytes from a string of the same length [-Wstringop-truncation] 1376 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FixedCellSize:",14); | ^ read_celfile_generic.c:1397:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 17 bytes from a string of the same length [-Wstringop-truncation] 1397 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureWidth:",17); | ^ read_celfile_generic.c:1418:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 1418 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FullFeatureHeight:",18); | ^ read_celfile_generic.c:1439:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 26 bytes from a string of the same length [-Wstringop-truncation] 1439 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"IgnoreOutliersInShiftRows:",26); | ^ read_celfile_generic.c:1462:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 18 bytes from a string of the same length [-Wstringop-truncation] 1462 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"FeatureExtraction:",18); | ^ read_celfile_generic.c:1486:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 1486 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolWidthExtenstion:",20); | ^ read_celfile_generic.c:1508:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 20 bytes from a string of the same length [-Wstringop-truncation] 1508 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"PoolHeightExtension:",20); | ^ read_celfile_generic.c:1530:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 12 bytes from a string of the same length [-Wstringop-truncation] 1530 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"UseSubgrids:",12); | ^ read_celfile_generic.c:1551:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 16 bytes from a string of the same length [-Wstringop-truncation] 1551 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"RandomizePixels:",16); | ^ read_celfile_generic.c:1573:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 11 bytes from a string of the same length [-Wstringop-truncation] 1573 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"ErrorBasis:",11); | ^ read_celfile_generic.c:1595:3: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying 8 bytes from a string of the same length [-Wstringop-truncation] 1595 | strncpy(&header_info->AlgorithmParameters[algorithm_paramsize],"StdMult:",8); | ^ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_clf.c -o read_clf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_generic.c -o read_generic.o read_generic.c: In function ‘print_decode_nvt_triplet’: read_generic.c:1293:37: warning: format ‘%f’ expects argument of type ‘double’, but argument 2 has type ‘int’ [-Wformat=] 1293 | Rprintf("Its a float value is %f\n",temp32); | ~^ ~~~~~~ | | | | | int | double | %d gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_multichannel_celfile_generic.c -o read_multichannel_celfile_generic.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DHAVE_ZLIB=1 -DHAVE_LIBPTHREAD=1 -DUSE_PTHREADS=1 -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c read_pgf.c -o read_pgf.o read_pgf.c:363:12: warning: ‘token_ends_with’ defined but not used [-Wunused-function] 363 | static int token_ends_with(char *token, char *ends_in){ | ^~~~~~~~~~~~~~~ gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o affyio.so fread_functions.o init_package.o read_abatch.o read_bpmap.o read_cdf_xda.o read_cdffile2.o read_celfile_generic.o read_clf.o read_generic.o read_multichannel_celfile_generic.o read_pgf.o -lpthread -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp2rzCf7/R.INSTALL135e8f8c95d83/affyio/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-affyio/00new/affyio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affyio) begin installing package ‘affy’ * installing *source* package ‘survAUC’ ... ** this is package ‘survAUC’ version ‘1.4-0’ ** package ‘survAUC’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpruCqyH/R.INSTALL1366be59a94714/survAUC/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_init_survAUC.c -o R_init_survAUC.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_Cham_Diao.c -o survAUC_Cham_Diao.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_HZ.c -o survAUC_HZ.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_Hung_Chiang.c -o survAUC_Hung_Chiang.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_SongZhou.c -o survAUC_SongZhou.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c survAUC_UNO.c -o survAUC_UNO.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c surv_measures.c -o surv_measures.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o survAUC.so R_init_survAUC.o survAUC_Cham_Diao.o survAUC_HZ.o survAUC_Hung_Chiang.o survAUC_SongZhou.o survAUC_UNO.o surv_measures.o utils.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpruCqyH/R.INSTALL1366be59a94714/survAUC/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-survAUC/00new/survAUC/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survAUC) * installing *source* package ‘irace’ ... ** this is package ‘irace’ version ‘4.3’ ** package ‘irace’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpsgrT4o/R.INSTALL135eea60656be1/irace/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/irace.c -o iracebin/irace.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/whereami.c -o iracebin/whereami.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native iracebin/irace.o iracebin/whereami.o -o iracebin/irace gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c iracebin/ablation.c -o iracebin/ablation.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native iracebin/ablation.o iracebin/whereami.o -o iracebin/ablation gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dummy/target-runner-dummy.c -o dummy/target-runner-dummy.o gcc-15 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native dummy/target-runner-dummy.o -o dummy/target-runner-dummy make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpsgrT4o/R.INSTALL135eea60656be1/irace/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-irace/00new/irace ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (irace) * installing *source* package ‘gamlss.cens’ ... ** this is package ‘gamlss.cens’ version ‘5.0-7’ ** package ‘gamlss.cens’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gamlss.cens) * installing *source* package ‘BBmisc’ ... ** this is package ‘BBmisc’ version ‘1.13.1’ ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp3kGxnI/R.INSTALL1370615f8b282a/BBmisc/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getMaxColRowIndex.c -o getMaxColRowIndex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getMaxIndex.c -o getMaxIndex.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c itostr.c -o itostr.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BBmisc.so getMaxColRowIndex.o getMaxIndex.o init.o itostr.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp3kGxnI/R.INSTALL1370615f8b282a/BBmisc/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BBmisc/00new/BBmisc/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BBmisc) begin installing package ‘llama’ begin installing package ‘BatchJobs’ begin installing package ‘OpenML’ begin installing package ‘ecr’ begin installing package ‘grapherator’ begin installing package ‘cmaesr’ begin installing package ‘farff’ begin installing package ‘EstimationTools’ * installing *source* package ‘laGP’ ... ** this is package ‘laGP’ version ‘1.5-9’ ** package ‘laGP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/RtmptHvEEb/R.INSTALL135eec697bb76a/laGP/src' /home/hornik/tmp/R/bin/R CMD SHLIB -o laGP.so *.c using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/RtmptHvEEb/R.INSTALL135eec697bb76a/laGP/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar.c -o covar.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar_sep.c -o covar_sep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c davies.c -o davies.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gamma.c -o gamma.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gp.c -o gp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gp_sep.c -o gp_sep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ieci.c -o ieci.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laGP.c -o laGP.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laGP_sep.c -o laGP_sep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linalg.c -o linalg.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c order.c -o order.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rbetter.c -o rbetter.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rhelp.c -o rhelp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o laGP.so covar.o covar_sep.o davies.o gamma.o gp.o gp_sep.o ieci.o init.o laGP.o laGP_sep.o linalg.o matrix.o order.o rbetter.o rhelp.o util.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/RtmptHvEEb/R.INSTALL135eec697bb76a/laGP/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmptHvEEb/R.INSTALL135eec697bb76a/laGP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-laGP/00new/laGP/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (laGP) * installing *source* package ‘akima’ ... ** this is package ‘akima’ version ‘0.6-3.6’ ** package ‘akima’ successfully unpacked and MD5 sums checked ** using staged installation checking for gcc... gcc-15 checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to accept ISO C89... none needed checking whether we are using the GNU Fortran compiler... yes checking whether gfortran-15 accepts -g... yes checking for correct optimization with SUN compilers... not running on x86*-solaris* configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpRWgEly/R.INSTALL13680f3e28f8b4/akima/src' gfortran-15 -g -O2 -Wall -pedantic -mtune=native -fpic -g -O2 -Wall -pedantic -mtune=native -c akima433.f -o akima433.o gfortran-15 -g -O2 -Wall -pedantic -mtune=native -fpic -g -O2 -Wall -pedantic -mtune=native -c akima697.f -o akima697.o gfortran-15 -g -O2 -Wall -pedantic -mtune=native -fpic -g -O2 -Wall -pedantic -mtune=native -c akima760.f -o akima760.o gfortran-15 -g -O2 -Wall -pedantic -mtune=native -fpic -g -O2 -Wall -pedantic -mtune=native -c akima761.f -o akima761.o gfortran-15 -g -O2 -Wall -pedantic -mtune=native -fpic -g -O2 -Wall -pedantic -mtune=native -c bilinear.f -o bilinear.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gfortran-15 -g -O2 -Wall -pedantic -mtune=native -fpic -g -O2 -Wall -pedantic -mtune=native -c tripack.f -o tripack.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o akima.so akima433.o akima697.o akima760.o akima761.o bilinear.o init.o tripack.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpRWgEly/R.INSTALL13680f3e28f8b4/akima/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-akima/00new/akima/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (akima) * installing *source* package ‘eaf’ ... ** this is package ‘eaf’ version ‘2.5.2’ ** package ‘eaf’ successfully unpacked and MD5 sums checked ** using staged installation checking for gsl-config... /usr/bin/gsl-config configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpkl6RY8/R.INSTALL13695a128bb3f/eaf/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eaf/avl.c -o eaf/avl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eaf/eaf3d.c -o eaf/eaf3d.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eaf/eaf.c -o eaf/eaf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eaf/io.c -o eaf/io.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mo-tools/hv_contrib.c -o mo-tools/hv_contrib.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mo-tools/hv.c -o mo-tools/hv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mo-tools/pareto.c -o mo-tools/pareto.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mo-tools/whv.c -o mo-tools/whv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mo-tools/whv_hype.c -o mo-tools/whv_hype.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Reaf.c -o Reaf.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Repsilon.c -o Repsilon.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rhv.c -o Rhv.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/include -DR_PACKAGE -DDEBUG=0 -I./eaf/ -I./mo-tools/ -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c Rnondominated.c -o Rnondominated.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o eaf.so eaf/avl.o eaf/eaf3d.o eaf/eaf.o eaf/io.o mo-tools/hv_contrib.o mo-tools/hv.o mo-tools/pareto.o mo-tools/whv.o mo-tools/whv_hype.o init.o Reaf.o Repsilon.o Rhv.o Rnondominated.o -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpkl6RY8/R.INSTALL13695a128bb3f/eaf/src' installing via 'install.libs.R' to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-eaf/00new/eaf ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (eaf) * installing *source* package ‘RSelenium’ ... ** this is package ‘RSelenium’ version ‘1.7.9’ ** package ‘RSelenium’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RSelenium) * installing *source* package ‘mRMRe’ ... ** this is package ‘mRMRe’ version ‘2.1.2.2’ ** package ‘mRMRe’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEa88f4/R.INSTALL1363ede549c5b/mRMRe/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Data.cpp -o Data.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Filter.cpp -o Filter.o Filter.cpp: In member function ‘const void Filter::placeElements(unsigned int, unsigned int, unsigned int)’: Filter.cpp:198:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare] 198 | for (int j = 0; j < mFixedFeatureCount; ++j) | ~~^~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Math.cpp -o Math.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c Matrix.cpp -o Matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c MutualInformationMatrix.cpp -o MutualInformationMatrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c exports.cpp -o exports.o exports.cpp: In function ‘SEXPREC* export_concordance_index(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:55:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 55 | for (unsigned int i = 0; i < INTEGER(sampleStratumCount)[0]; ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:80:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 80 | for (unsigned int i = 0; i < LENGTH(childrenCountPerLevel); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:92:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 92 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:105:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 105 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp: In function ‘SEXPREC* export_filters_bootstrap(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: exports.cpp:153:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 153 | for (unsigned int i = 0; i < LENGTH(targetFeatureIndices); ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:159:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 159 | for (unsigned int k = 0; k < INTEGER(featureCount)[0]; ++k) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~ exports.cpp:168:36: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 168 | for (unsigned int j = 0; j < LENGTH(targetFeatureIndices); ++j) | ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o mRMRe.so Data.o Filter.o Math.o Matrix.o MutualInformationMatrix.o exports.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEa88f4/R.INSTALL1363ede549c5b/mRMRe/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-mRMRe/00new/mRMRe/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mRMRe) * installing *source* package ‘rucrdtw’ ... ** this is package ‘rucrdtw’ version ‘0.1.6’ ** package ‘rucrdtw’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpBHwAxa/R.INSTALL13657f120646cc/rucrdtw/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c dtw_functions.cpp -o dtw_functions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c ed_functions.cpp -o ed_functions.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rucrdtw.so RcppExports.o dtw_functions.o ed_functions.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpBHwAxa/R.INSTALL13657f120646cc/rucrdtw/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rucrdtw/00new/rucrdtw/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rucrdtw) * installing *source* package ‘farff’ ... ** this is package ‘farff’ version ‘1.1.1’ ** package ‘farff’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpXLJy86/R.INSTALL13759b254bbdc8/farff/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c preproc_datatable.c -o preproc_datatable.o preproc_datatable.c: In function ‘dt_convert_line’: preproc_datatable.c:11:7: warning: unused variable ‘is_quote’ [-Wunused-variable] 11 | int is_quote = 0; | ^~~~~~~~ preproc_datatable.c: In function ‘c_dt_preproc’: preproc_datatable.c:91:12: warning: unused variable ‘tmp’ [-Wunused-variable] 91 | char * tmp = fgets(line_buf_1, sizeof line_buf_1, handle_in); | ^~~ preproc_datatable.c:83:7: warning: unused variable ‘data_sect_reached’ [-Wunused-variable] 83 | int data_sect_reached = 0; | ^~~~~~~~~~~~~~~~~ preproc_datatable.c:82:9: warning: unused variable ‘line_p’ [-Wunused-variable] 82 | char* line_p; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c preproc_readr.c -o preproc_readr.o preproc_readr.c: In function ‘rd_convert_line’: preproc_readr.c:11:7: warning: unused variable ‘is_quote’ [-Wunused-variable] 11 | int is_quote = 0; | ^~~~~~~~ preproc_readr.c: In function ‘c_rd_preproc’: preproc_readr.c:82:12: warning: unused variable ‘tmp’ [-Wunused-variable] 82 | char * tmp = fgets(line_buf_1, sizeof line_buf_1, handle_in); | ^~~ preproc_readr.c:75:7: warning: unused variable ‘data_sect_reached’ [-Wunused-variable] 75 | int data_sect_reached = 0; | ^~~~~~~~~~~~~~~~~ preproc_readr.c:74:9: warning: unused variable ‘line_p’ [-Wunused-variable] 74 | char* line_p; | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tools.c -o tools.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o farff.so init.o preproc_datatable.o preproc_readr.o tools.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpXLJy86/R.INSTALL13759b254bbdc8/farff/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-farff/00new/farff/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (farff) * installing *source* package ‘cmaesr’ ... ** this is package ‘cmaesr’ version ‘1.0.3’ ** package ‘cmaesr’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cmaesr) * installing *source* package ‘EGAnet’ ... ** this is package ‘EGAnet’ version ‘2.4.0’ ** package ‘EGAnet’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpzpPrdG/R.INSTALL135ebf5271d7b3/EGAnet/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c modularity.c -o modularity.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c nanotime.c -o nanotime.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polychoric_matrix.c -o polychoric_matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c signed_modularity.c -o signed_modularity.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c xoshiro.c -o xoshiro.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ziggurat.c -o ziggurat.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o EGAnet.so init.o modularity.o nanotime.o polychoric_matrix.o signed_modularity.o xoshiro.o ziggurat.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpzpPrdG/R.INSTALL135ebf5271d7b3/EGAnet/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-EGAnet/00new/EGAnet/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EGAnet) * installing *source* package ‘OpenML’ ... ** this is package ‘OpenML’ version ‘1.12’ ** package ‘OpenML’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (OpenML) * installing *source* package ‘BatchJobs’ ... ** this is package ‘BatchJobs’ version ‘1.10’ ** package ‘BatchJobs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BatchJobs) * installing *source* package ‘affy’ ... ** this is package ‘affy’ version ‘1.88.0’ ** package ‘affy’ successfully unpacked and MD5 sums checked ** using staged installation creating cache ./config.cache checking how to run the C preprocessor... gcc-15 -E checking for main in -lz... yes checking for zlib.h... yes checking if zlib version >= 1.1.3... yes updating cache ./config.cache creating ./config.status creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpYcI0Pb/R.INSTALL1373ad4250d94a/affy/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c chipbackground.c -o chipbackground.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c getall_locations.c -o getall_locations.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mas5calls.c -o mas5calls.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma2.c -o rma2.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -DHAVE_ZLIB=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/preprocessCore/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rma_common.c -o rma_common.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpYcI0Pb/R.INSTALL1373ad4250d94a/affy/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-affy/00new/affy/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (affy) begin installing package ‘vsn’ * installing *source* package ‘wrMisc’ ... ** this is package ‘wrMisc’ version ‘1.15.4’ ** package ‘wrMisc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrMisc) begin installing package ‘wrGraph’ * installing *source* package ‘grapherator’ ... ** this is package ‘grapherator’ version ‘1.0.0’ ** package ‘grapherator’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (grapherator) * installing *source* package ‘EstimationTools’ ... ** this is package ‘EstimationTools’ version ‘4.3.1’ ** package ‘EstimationTools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (EstimationTools) * installing *source* package ‘FDboost’ ... ** this is package ‘FDboost’ version ‘1.1-3’ ** package ‘FDboost’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FDboost) * installing *source* package ‘llama’ ... ** this is package ‘llama’ version ‘0.10.1’ ** package ‘llama’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (llama) * installing *source* package ‘autothresholdr’ ... ** this is package ‘autothresholdr’ version ‘1.4.3’ ** package ‘autothresholdr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp1CjS09/R.INSTALL13722d327d97d4/autothresholdr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c AutoThreshold.cpp -o AutoThreshold.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pillar_stats.cpp -o pillar_stats.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o autothresholdr.so AutoThreshold.o RcppExports.o pillar_stats.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp1CjS09/R.INSTALL13722d327d97d4/autothresholdr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-autothresholdr/00new/autothresholdr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (autothresholdr) begin installing package ‘detrendr’ * installing *source* package ‘wrGraph’ ... ** this is package ‘wrGraph’ version ‘1.3.11’ ** package ‘wrGraph’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (wrGraph) * installing *source* package ‘vsn’ ... ** this is package ‘vsn’ version ‘3.78.1’ ** package ‘vsn’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpa75u0K/R.INSTALL13789a7fbebac9/vsn/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vsn.c -o vsn.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vsn2.c -o vsn2.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o vsn.so init.o vsn.o vsn2.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpa75u0K/R.INSTALL13789a7fbebac9/vsn/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-vsn/00new/vsn/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (vsn) * installing *source* package ‘ecr’ ... ** this is package ‘ecr’ version ‘2.1.1’ ** package ‘ecr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp8gJx4k/R.INSTALL137595cd235cc/ecr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DVARIANT=4 -c -o avl.o avl.c gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c computeHypervolume.c -o computeHypervolume.o In file included from computeHypervolume.c:4: computeHypervolume.c: In function ‘computeHVC’: computeHypervolume.c:18:52: warning: unused variable ‘len_ref’ [-Wunused-variable] 18 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, len_ref); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ computeHypervolume.c: In function ‘computeHVContributionC’: computeHypervolume.c:44:52: warning: unused variable ‘n_ref_point’ [-Wunused-variable] 44 | EXTRACT_NUMERIC_VECTOR(r_ref_point, c_ref_point, n_ref_point); | ^~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crowdingDistance.c -o crowdingDistance.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c dominance.c -o dominance.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c emoa.indicators.cpp -o emoa.indicators.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c eps_ind.c -o eps_ind.o In file included from eps_ind.c:38: eps_ind.c: In function ‘emoaIndEpsC’: eps_ind.c:112:52: warning: unused variable ‘n_ref_objectives’ [-Wunused-variable] 112 | EXTRACT_NUMERIC_MATRIX(ref_points, c_ref_points, n_ref_objectives, n_ref_points); | ^~~~~~~~~~~~~~~~ macros.h:11:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ eps_ind.c:64:16: warning: ‘eps_j’ may be used uninitialized [-Wmaybe-uninitialized] 64 | double eps, eps_j, eps_k, eps_temp; | ^~~~~ eps_ind.c:64:23: warning: ‘eps_k’ may be used uninitialized [-Wmaybe-uninitialized] 64 | double eps, eps_j, eps_k, eps_temp; | ^~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c helpers.c -o helpers.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -DVARIANT=4 -c -o hv.o hv.c gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c polynomialMutation.c -o polynomialMutation.o In file included from polynomialMutation.c:4: polynomialMutation.c: In function ‘polynomialMutationC’: polynomialMutation.c:29:42: warning: unused variable ‘c_upper_length’ [-Wunused-variable] 29 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ polynomialMutation.c:28:42: warning: unused variable ‘c_lower_length’ [-Wunused-variable] 28 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c r_ind.c -o r_ind.o In file included from r_ind.c:35: r_ind.c: In function ‘do_unary_r2_ind’: r_ind.c:197:44: warning: unused variable ‘n_ideal’ [-Wunused-variable] 197 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:196:48: warning: unused variable ‘k_weights’ [-Wunused-variable] 196 | EXTRACT_NUMERIC_MATRIX(s_weights, weights, k_weights, n_weights); | ^~~~~~~~~ macros.h:11:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 11 | const R_len_t N_ROW = nrows(S_EXP); \ | ^~~~~ r_ind.c: In function ‘computeRIndicatorC’: r_ind.c:242:44: warning: unused variable ‘n_nadir’ [-Wunused-variable] 242 | EXTRACT_NUMERIC_VECTOR(s_nadir, nadir, n_nadir); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ r_ind.c:241:44: warning: unused variable ‘n_ideal’ [-Wunused-variable] 241 | EXTRACT_NUMERIC_VECTOR(s_ideal, ideal, n_ideal); | ^~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c simulatedBinaryCrossover.c -o simulatedBinaryCrossover.o In file included from simulatedBinaryCrossover.c:4: simulatedBinaryCrossover.c: In function ‘simulatedBinaryCrossoverC’: simulatedBinaryCrossover.c:50:42: warning: unused variable ‘c_upper_length’ [-Wunused-variable] 50 | EXTRACT_NUMERIC_VECTOR(upper, c_upper, c_upper_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:49:42: warning: unused variable ‘c_lower_length’ [-Wunused-variable] 49 | EXTRACT_NUMERIC_VECTOR(lower, c_lower, c_lower_length); | ^~~~~~~~~~~~~~ macros.h:16:19: note: in definition of macro ‘EXTRACT_NUMERIC_VECTOR’ 16 | const R_len_t LENGTH = length(S_EXP); | ^~~~~~ simulatedBinaryCrossover.c:46:49: warning: unused variable ‘n’ [-Wunused-variable] 46 | EXTRACT_NUMERIC_MATRIX(parents, c_parents, d, n); | ^ macros.h:12:19: note: in definition of macro ‘EXTRACT_NUMERIC_MATRIX’ 12 | const R_len_t N_COL = ncols(S_EXP); | ^~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o ecr.so RcppExports.o avl.o computeHypervolume.o crowdingDistance.o dominance.o emoa.indicators.o eps_ind.o helpers.o hv.o polynomialMutation.o r_ind.o simulatedBinaryCrossover.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp8gJx4k/R.INSTALL137595cd235cc/ecr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-ecr/00new/ecr/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ecr) * installing *source* package ‘FSelectorRcpp’ ... ** this is package ‘FSelectorRcpp’ version ‘0.3.13’ ** package ‘FSelectorRcpp’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpjnKLI5/R.INSTALL135ee54fe5c3a9/FSelectorRcpp/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c cutOff.cpp -o cutOff.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c discretize.cpp -o discretize.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c discretizeControl.cpp -o discretizeControl.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c information_gain.cpp -o information_gain.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c support.cpp -o support.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c test-cpp.cpp -o test-cpp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppArmadillo/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/testthat/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I../inst/include -fpic -g -O2 -Wall -pedantic -mtune=native -c test-runner.cpp -o test-runner.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o FSelectorRcpp.so RcppExports.o cutOff.o discretize.o discretizeControl.o information_gain.o init.o support.o test-cpp.o test-runner.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpjnKLI5/R.INSTALL135ee54fe5c3a9/FSelectorRcpp/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-FSelectorRcpp/00new/FSelectorRcpp/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FSelectorRcpp) * installing *source* package ‘detrendr’ ... ** this is package ‘detrendr’ version ‘0.6.15’ ** package ‘detrendr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpuyavH6/R.INSTALL1379c9167783e5/detrendr/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c anyNA.cpp -o anyNA.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c col_stats_parallel.cpp -o col_stats_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c frame_utils.cpp -o frame_utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pillar_stats.cpp -o pillar_stats.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pillar_stats_parallel.cpp -o pillar_stats_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pillar_utils_parallel.cpp -o pillar_utils_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rbernoulli_parallel.cpp -o rbernoulli_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rboxes.cpp -o rboxes.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c row_stats_parallel.cpp -o row_stats_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c rpois_parallel.cc -o rpois_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth.cc -o smooth.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c smooth_parallel.cc -o smooth_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c stats_parallel.cc -o stats_parallel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c utils.cpp -o utils.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o detrendr.so RcppExports.o anyNA.o col_stats_parallel.o frame_utils.o pillar_stats.o pillar_stats_parallel.o pillar_utils_parallel.o rbernoulli_parallel.o rboxes.o row_stats_parallel.o rpois_parallel.o smooth.o smooth_parallel.o stats_parallel.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpuyavH6/R.INSTALL1379c9167783e5/detrendr/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-detrendr/00new/detrendr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (detrendr) * installing *source* package ‘crs’ ... ** this is package ‘crs’ version ‘0.15-38’ ** package ‘crs’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpKHsE3k/R.INSTALL135ed171a9f6b/crs/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RuniqueCombs.c -o RuniqueCombs.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c bspline.c -o bspline.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gsl_bspline.c -o gsl_bspline.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c snomadr.cpp -o snomadr.o In file included from ./nomad_src/Direction.hpp:54, from ./nomad_src/Directions.hpp:55, from ./nomad_src/Variable_Group.hpp:54, from ./nomad_src/Signature.hpp:54, from ./nomad_src/Parameters.hpp:59, from ./nomad_src/Eval_Point.hpp:54, from ./nomad_src/Cache_Point.hpp:54, from ./nomad_src/Cache.hpp:63, from ./nomad_src/Barrier.hpp:54, from ./nomad_src/Evaluator_Control.hpp:54, from ./nomad_src/Search.hpp:53, from ./nomad_src/Quad_Model_Evaluator.hpp:54, from ./nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from ./nomad_src/Quad_Model_Search.hpp:55, from ./nomad_src/Mads.hpp:54, from ./nomad_src/nomad.hpp:53, from snomadr.h:51, from snomadr.cpp:32: ./nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ ./nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c crs_init.c -o crs_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c mgcv.c -o mgcv.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/nomad.cpp -o nomad_src/nomad.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/nomad.hpp:53, from nomad_src/nomad.cpp:50: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Algo_Parameters.cpp -o nomad_src/Algo_Parameters.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Barrier.cpp -o nomad_src/Barrier.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Barrier.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache.cpp -o nomad_src/Cache.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Cache.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache_File_Point.cpp -o nomad_src/Cache_File_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_File_Point.cpp:52: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache_Point.cpp -o nomad_src/Cache_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Cache_Search.cpp -o nomad_src/Cache_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/Cache_Search.hpp:54, from nomad_src/Cache_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Clock.cpp -o nomad_src/Clock.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Direction.cpp -o nomad_src/Direction.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Directions.cpp -o nomad_src/Directions.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Display.cpp -o nomad_src/Display.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Double.cpp -o nomad_src/Double.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Eval_Point.cpp -o nomad_src/Eval_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Eval_Point.cpp:52: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Evaluator.cpp -o nomad_src/Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Evaluator_Control.cpp -o nomad_src/Evaluator_Control.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Evaluator_Control.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Extended_Poll.cpp -o nomad_src/Extended_Poll.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/Extended_Poll.hpp:54, from nomad_src/Extended_Poll.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/L_Curve.cpp -o nomad_src/L_Curve.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/LH_Search.cpp -o nomad_src/LH_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/LH_Search.hpp:54, from nomad_src/LH_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Mads.cpp -o nomad_src/Mads.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/Mads.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/OrthogonalMesh.cpp -o nomad_src/OrthogonalMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Model_Sorted_Point.cpp -o nomad_src/Model_Sorted_Point.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Model_Stats.cpp -o nomad_src/Model_Stats.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Multi_Obj_Evaluator.cpp -o nomad_src/Multi_Obj_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/NelderMead_Search.cpp -o nomad_src/NelderMead_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/NelderMead_Search.hpp:54, from nomad_src/NelderMead_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/NelderMead_Simplex_Eval_Point.cpp -o nomad_src/NelderMead_Simplex_Eval_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/NelderMead_Simplex_Eval_Point.hpp:55, from nomad_src/NelderMead_Simplex_Eval_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Parameters.cpp -o nomad_src/Parameters.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Parameters.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ In file included from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Slave.hpp:54, from nomad_src/Parameters.cpp:52: nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Parameter_Entries.cpp -o nomad_src/Parameter_Entries.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Parameter_Entry.cpp -o nomad_src/Parameter_Entry.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Pareto_Front.cpp -o nomad_src/Pareto_Front.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.hpp:54, from nomad_src/Pareto_Point.hpp:54, from nomad_src/Pareto_Front.hpp:54, from nomad_src/Pareto_Front.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Pareto_Point.cpp -o nomad_src/Pareto_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Multi_Obj_Evaluator.hpp:54, from nomad_src/Pareto_Point.hpp:54, from nomad_src/Pareto_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Phase_One_Evaluator.cpp -o nomad_src/Phase_One_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Phase_One_Evaluator.hpp:54, from nomad_src/Phase_One_Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Phase_One_Search.cpp -o nomad_src/Phase_One_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Phase_One_Search.hpp:54, from nomad_src/Phase_One_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Point.cpp -o nomad_src/Point.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Priority_Eval_Point.cpp -o nomad_src/Priority_Eval_Point.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Priority_Eval_Point.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Quad_Model.cpp -o nomad_src/Quad_Model.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Quad_Model.hpp:54, from nomad_src/Quad_Model.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Quad_Model_Evaluator.cpp -o nomad_src/Quad_Model_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Quad_Model_Evaluator.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Quad_Model_Search.cpp -o nomad_src/Quad_Model_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Speculative_Search.hpp:54, from nomad_src/Mads.hpp:55, from nomad_src/Quad_Model_Search.hpp:54, from nomad_src/Quad_Model_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Random_Pickup.cpp -o nomad_src/Random_Pickup.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/RNG.cpp -o nomad_src/RNG.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Sgtelib_Model_Evaluator.cpp -o nomad_src/Sgtelib_Model_Evaluator.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Sgtelib_Model_Manager.hpp:36, from nomad_src/Sgtelib_Model_Evaluator.hpp:37, from nomad_src/Sgtelib_Model_Evaluator.cpp:33: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ In file included from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Sgtelib_Model_Manager.hpp:37: nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Sgtelib_Model_Search.cpp -o nomad_src/Sgtelib_Model_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/LH_Search.hpp:54, from nomad_src/Sgtelib_Model_Search.hpp:36, from nomad_src/Sgtelib_Model_Search.cpp:33: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Sgtelib_Model_Manager.cpp -o nomad_src/Sgtelib_Model_Manager.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Sgtelib_Model_Manager.hpp:36, from nomad_src/Sgtelib_Model_Manager.cpp:32: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ In file included from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Sgtelib_Model_Manager.hpp:37: nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Signature.cpp -o nomad_src/Signature.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Slave.cpp -o nomad_src/Slave.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Priority_Eval_Point.hpp:55, from nomad_src/Evaluator.hpp:55, from nomad_src/Slave.hpp:54, from nomad_src/Slave.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Speculative_Search.cpp -o nomad_src/Speculative_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Speculative_Search.hpp:54, from nomad_src/Speculative_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Stats.cpp -o nomad_src/Stats.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/SMesh.cpp -o nomad_src/SMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/TrendMatrix_Line_Search.cpp -o nomad_src/TrendMatrix_Line_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/TrendMatrix_Line_Search.hpp:54, from nomad_src/TrendMatrix_Line_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/GMesh.cpp -o nomad_src/GMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/XMesh.cpp -o nomad_src/XMesh.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/utils.cpp -o nomad_src/utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/Variable_Group.cpp -o nomad_src/Variable_Group.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c nomad_src/VNS_Search.cpp -o nomad_src/VNS_Search.o In file included from nomad_src/Direction.hpp:54, from nomad_src/Directions.hpp:55, from nomad_src/Variable_Group.hpp:54, from nomad_src/Signature.hpp:54, from nomad_src/Parameters.hpp:59, from nomad_src/Eval_Point.hpp:54, from nomad_src/Cache_Point.hpp:54, from nomad_src/Cache.hpp:63, from nomad_src/Barrier.hpp:54, from nomad_src/Evaluator_Control.hpp:54, from nomad_src/Search.hpp:53, from nomad_src/Quad_Model_Evaluator.hpp:54, from nomad_src/Single_Obj_Quad_Model_Evaluator.hpp:55, from nomad_src/Quad_Model_Search.hpp:55, from nomad_src/Mads.hpp:54, from nomad_src/VNS_Search.hpp:54, from nomad_src/VNS_Search.cpp:51: nomad_src/Point.hpp:435:22: warning: ‘virtual bool NOMAD::Point::operator<(const NOMAD::Point&) const’ was hidden [-Woverloaded-virtual=] 435 | virtual bool operator < ( const Point & p ) const; | ^~~~~~~~ nomad_src/Eval_Point.hpp:463:14: note: by ‘bool NOMAD::Eval_Point::operator<(const NOMAD::Eval_Point&) const’ 463 | bool operator < ( const Eval_Point & x ) const; | ^~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/TrainingSet.cpp -o sgtelib_src/TrainingSet.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Parameters.cpp -o sgtelib_src/Surrogate_Parameters.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_KS.cpp -o sgtelib_src/Surrogate_KS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_RBF.cpp -o sgtelib_src/Surrogate_RBF.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_PRS.cpp -o sgtelib_src/Surrogate_PRS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_PRS_EDGE.cpp -o sgtelib_src/Surrogate_PRS_EDGE.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_LOWESS.cpp -o sgtelib_src/Surrogate_LOWESS.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Kriging.cpp -o sgtelib_src/Surrogate_Kriging.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_PRS_CAT.cpp -o sgtelib_src/Surrogate_PRS_CAT.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Ensemble.cpp -o sgtelib_src/Surrogate_Ensemble.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_CN.cpp -o sgtelib_src/Surrogate_CN.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate.cpp -o sgtelib_src/Surrogate.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Matrix.cpp -o sgtelib_src/Matrix.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Kernel.cpp -o sgtelib_src/Kernel.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Utils.cpp -o sgtelib_src/Surrogate_Utils.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Surrogate_Factory.cpp -o sgtelib_src/Surrogate_Factory.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Tests.cpp -o sgtelib_src/Tests.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/sgtelib_help.cpp -o sgtelib_src/sgtelib_help.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/Metrics.cpp -o sgtelib_src/Metrics.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I./nomad_src -I./sgtelib_src -fpic -g -O2 -Wall -pedantic -mtune=native -c sgtelib_src/sgtelib.cpp -o sgtelib_src/sgtelib.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o crs.so RuniqueCombs.o bspline.o gsl_bspline.o snomadr.o crs_init.o mgcv.o ./nomad_src/nomad.o ./nomad_src/Algo_Parameters.o ./nomad_src/Barrier.o ./nomad_src/Cache.o ./nomad_src/Cache_File_Point.o ./nomad_src/Cache_Point.o ./nomad_src/Cache_Search.o ./nomad_src/Clock.o ./nomad_src/Direction.o ./nomad_src/Directions.o ./nomad_src/Display.o ./nomad_src/Double.o ./nomad_src/Eval_Point.o ./nomad_src/Evaluator.o ./nomad_src/Evaluator_Control.o ./nomad_src/Extended_Poll.o ./nomad_src/L_Curve.o ./nomad_src/LH_Search.o ./nomad_src/Mads.o ./nomad_src/OrthogonalMesh.o ./nomad_src/Model_Sorted_Point.o ./nomad_src/Model_Stats.o ./nomad_src/Multi_Obj_Evaluator.o ./nomad_src/NelderMead_Search.o ./nomad_src/NelderMead_Simplex_Eval_Point.o ./nomad_src/Parameters.o ./nomad_src/Parameter_Entries.o ./nomad_src/Parameter_Entry.o ./nomad_src/Pareto_Front.o ./nomad_src/Pareto_Point.o ./nomad_src/Phase_One_Evaluator.o ./nomad_src/Phase_One_Search.o ./nomad_src/Point.o ./nomad_src/Priority_Eval_Point.o ./nomad_src/Quad_Model.o ./nomad_src/Quad_Model_Evaluator.o ./nomad_src/Quad_Model_Search.o ./nomad_src/Random_Pickup.o ./nomad_src/RNG.o ./nomad_src/Sgtelib_Model_Evaluator.o ./nomad_src/Sgtelib_Model_Search.o ./nomad_src/Sgtelib_Model_Manager.o ./nomad_src/Signature.o ./nomad_src/Slave.o ./nomad_src/Speculative_Search.o ./nomad_src/Stats.o ./nomad_src/SMesh.o ./nomad_src/TrendMatrix_Line_Search.o ./nomad_src/GMesh.o ./nomad_src/XMesh.o ./nomad_src/utils.o ./nomad_src/Variable_Group.o ./nomad_src/VNS_Search.o ./sgtelib_src/TrainingSet.o ./sgtelib_src/Surrogate_Parameters.o ./sgtelib_src/Surrogate_KS.o ./sgtelib_src/Surrogate_RBF.o ./sgtelib_src/Surrogate_PRS.o ./sgtelib_src/Surrogate_PRS_EDGE.o ./sgtelib_src/Surrogate_LOWESS.o ./sgtelib_src/Surrogate_Kriging.o ./sgtelib_src/Surrogate_PRS_CAT.o ./sgtelib_src/Surrogate_Ensemble.o ./sgtelib_src/Surrogate_CN.o ./sgtelib_src/Surrogate.o ./sgtelib_src/Matrix.o ./sgtelib_src/Kernel.o ./sgtelib_src/Surrogate_Utils.o ./sgtelib_src/Surrogate_Factory.o ./sgtelib_src/Tests.o ./sgtelib_src/sgtelib_help.o ./sgtelib_src/Metrics.o ./sgtelib_src/sgtelib.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpKHsE3k/R.INSTALL135ed171a9f6b/crs/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-crs/00new/crs/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (crs) checking BBmisc_1.13.1.tar.gz ... checking aslib_0.1.3.tar.gz ... checking BatchExperiments_1.4.4.tar.gz ... checking BatchJobs_1.10.tar.gz ... checking BlockCov_0.1.1.tar.gz ... checking cmaesr_1.0.3.tar.gz ... checking delayed_0.5.0.tar.gz ... checking DynNom_5.1.tar.gz ... checking ecr_2.1.1.tar.gz ... checking EFAfactors_1.2.4.tar.gz ... checking EstimationTools_4.3.1.tar.gz ... checking fail_1.3.tar.gz ... checking farff_1.1.1.tar.gz ... checking flacco_1.8.tar.gz ... checking grapherator_1.0.0.tar.gz ... checking ig.degree.betweenness_0.2.0.tar.gz ... checking latentFactoR_0.0.7.tar.gz ... checking llama_0.10.1.tar.gz ... checking mbsts_3.0.tar.gz ... checking mcMST_1.1.1.tar.gz ... checking MicrobiomeStat_1.3.tar.gz ... checking mlr_2.19.3.tar.gz ... checking mlrCPO_0.3.8.tar.gz ... checking mlrMBO_1.1.5.1.tar.gz ... checking nandb_2.1.1.tar.gz ... checking OpenML_1.12.tar.gz ... checking parallelMap_1.5.1.tar.gz ... checking ParamHelpers_1.14.2.tar.gz ... checking wrMisc_1.15.4.tar.gz ... checking SHAPforxgboost_0.2.0.tar.gz ... checking PLreg_0.4.1.tar.gz ... checking robustbetareg_0.3.1.tar.gz ... checking smoof_1.6.0.3.tar.gz ... checking tspmeta_1.2.tar.gz ... checking RelDists_1.0.0.tar.gz ... checking RBPcurve_1.3.tar.gz ... checking validata_0.1.0.tar.gz ... checking binpackr_0.2.0.tar.gz ... checking tuneRanger_0.8.1.tar.gz ... checking RivRetrieve_0.1.6.tar.gz ... Depends: Package: BBmisc Imports: checkmate (>= 1.8.0), data.table, methods, stats, utils Timings: user system elapsed BBmisc 53.182 5.01 63.529 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 4 35 Check results summary: BBmisc ... OK rdepends_aslib ... OK rdepends_BatchExperiments ... OK rdepends_BatchJobs ... OK rdepends_binpackr ... OK rdepends_BlockCov ... OK rdepends_cmaesr ... OK rdepends_delayed ... OK rdepends_DynNom ... OK rdepends_ecr ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_EFAfactors ... OK rdepends_EstimationTools ... OK rdepends_fail ... OK rdepends_farff ... OK rdepends_flacco ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_grapherator ... OK rdepends_ig.degree.betweenness ... OK rdepends_latentFactoR ... OK rdepends_llama ... OK rdepends_mbsts ... OK rdepends_mcMST ... OK rdepends_MicrobiomeStat ... OK rdepends_mlr ... OK rdepends_mlrCPO ... OK rdepends_mlrMBO ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_nandb ... OK rdepends_OpenML ... OK rdepends_parallelMap ... OK rdepends_ParamHelpers ... OK rdepends_PLreg ... OK rdepends_RBPcurve ... OK rdepends_RelDists ... OK rdepends_RivRetrieve ... OK rdepends_robustbetareg ... OK rdepends_SHAPforxgboost ... OK rdepends_smoof ... NOTE * checking Rd files ... [1s/1s] NOTE rdepends_tspmeta ... OK rdepends_tuneRanger ... OK rdepends_validata ... OK rdepends_wrMisc ... OK Check results changes: Package: BlockCov Check: CRAN incoming feasibility Old result: NOTE Package: DynNom Check: CRAN incoming feasibility Old result: NOTE Package: fail Check: CRAN incoming feasibility Old result: NOTE Package: flacco Check: CRAN incoming feasibility Old result: NOTE Package: llama Check: CRAN incoming feasibility Old result: NOTE Package: mbsts Check: CRAN incoming feasibility Old result: NOTE Package: OpenML Check: CRAN incoming feasibility Old result: NOTE Package: PLreg Check: CRAN incoming feasibility Old result: NOTE Package: tspmeta Check: CRAN incoming feasibility Old result: NOTE