* installing *source* package ‘BAS’ ... ** this is package ‘BAS’ version ‘2.0.0’ ** using staged installation ** libs using C compiler: ‘Debian clang version 21.1.6 (3)’ using Fortran compiler: ‘Debian flang version 21.1.6 (3)’ clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c E_ZS.c -o E_ZS.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c MH-funs.c -o MH-funs.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ZS_approx_full_np.c -o ZS_approx_full_np.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c ZS_approx_null_np.c -o ZS_approx_null_np.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c amcmc-funs.c -o amcmc-funs.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesglm.c -o bayesglm.o bayesglm.c:62:17: warning: variable 'betapriorfamily' set but not used [-Wunused-but-set-variable] 62 | betapriorptr *betapriorfamily; | ^ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c bayesreg.c -o bayesreg.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c betapriorfamily.c -o betapriorfamily.o betapriorfamily.c:239:38: warning: unused variable 'u' [-Wunused-variable] 239 | double a, b, s, r, v, theta, n, p, u, shrinkage; | ^ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c cch.c -o cch.o flang-21 -fpic -g -O2 -c dch1up.f -o dch1up.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c family.c -o family.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_deterministic.c -o glm_deterministic.o glm_deterministic.c:55:16: warning: unused variable 'shrinkage_m' [-Wunused-variable] 55 | double *probs,shrinkage_m,logmargy; | ^~~~~~~~~~~ glm_deterministic.c:55:28: warning: unused variable 'logmargy' [-Wunused-variable] 55 | double *probs,shrinkage_m,logmargy; | ^~~~~~~~ 2 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_fit.c -o glm_fit.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_mcmc.c -o glm_mcmc.o glm_mcmc.c:17:39: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable] 17 | double *probs, MH=0.0, prior_m=1.0, shrinkage_m, logmargy, postold, postnew; | ^ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_mcmc_grow.c -o glm_mcmc_grow.o glm_mcmc_grow.c:108:38: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable] 108 | double *probs, MH=0.0, prior_m=1.0, shrinkage_m, logmarg_m, postold, postnew; | ^ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_mcmcbas.c -o glm_mcmcbas.o glm_mcmcbas.c:46:37: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable] 46 | double *probs, MH=0.0, prior_m=1.0,shrinkage_m, logmargy, postold, postnew; | ^ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_sampleworep.c -o glm_sampleworep.o glm_sampleworep.c:109:16: warning: variable 'logmargy' set but not used [-Wunused-but-set-variable] 109 | double *probs,logmargy, shrinkage_m; | ^ glm_sampleworep.c:109:26: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable] 109 | double *probs,logmargy, shrinkage_m; | ^ 2 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c glm_sampleworep_grow.c -o glm_sampleworep_grow.o glm_sampleworep_grow.c:90:16: warning: variable 'logmargy' set but not used [-Wunused-but-set-variable] 90 | double *probs,logmargy, shrinkage_m; | ^ glm_sampleworep_grow.c:90:26: warning: variable 'shrinkage_m' set but not used [-Wunused-but-set-variable] 90 | double *probs,logmargy, shrinkage_m; | ^ 2 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hg_approx_null_np.c -o hg_approx_null_np.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hyp1F1.c -o hyp1F1.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hyp2f1.c -o hyp2f1.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hypergeometric1F1.c -o hypergeometric1F1.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c hypergeometric2F1.c -o hypergeometric2F1.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_amcmc.c -o lm_amcmc.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_amcmc_growable.c -o lm_amcmc_growable.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_deterministic.c -o lm_deterministic.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_mcmc.c -o lm_mcmc.o lm_mcmc.c:127:6: warning: unused variable 'k' [-Wunused-variable] 127 | int k = LENGTH(modelprobs); | ^ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_mcmc_grow.c -o lm_mcmc_grow.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_mcmcbas.c -o lm_mcmcbas.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_sampleworep-grow.c -o lm_sampleworep-grow.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c lm_sampleworep.c -o lm_sampleworep.o lm_sampleworep.c:36:6: warning: unused variable 'nModels' [-Wunused-variable] 36 | int nModels=LENGTH(Rmodeldim); | ^~~~~~~ 1 warning generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mem.c -o mem.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c model_probabilities.c -o model_probabilities.o model_probabilities.c:127:22: warning: unused variable 'n' [-Wunused-variable] 127 | int m, j, *model, *n; | ^ model_probabilities.c:129:17: warning: unused variable 'probNotInS' [-Wunused-variable] 129 | double *beta, probNotInS = 1.0; | ^~~~~~~~~~ model_probabilities.c:129:11: warning: unused variable 'Rf_beta' [-Wunused-variable] 129 | double *beta, probNotInS = 1.0; | ^~~~ /home/hornik/tmp/R-d-clang-21/include/Rmath.h:221:15: note: expanded from macro 'beta' 221 | #define beta Rf_beta | ^~~~~~~ 3 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c mtherr.c -o mtherr.o clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c resizeVectors.c -o resizeVectors.o resizeVectors.c:86:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 86 | break; | ^ resizeVectors.c:78:3: note: previous statement is here 78 | for (i = 0; i < len_new; i++) | ^ resizeVectors.c:94:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 94 | break; | ^ resizeVectors.c:88:3: note: previous statement is here 88 | for (i = 0; i < len_new; i++) | ^ resizeVectors.c:106:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 106 | break; | ^ resizeVectors.c:102:3: note: previous statement is here 102 | for (i = 0; i < len_new; i++) | ^ resizeVectors.c:114:5: warning: misleading indentation; statement is not part of the previous 'for' [-Wmisleading-indentation] 114 | break; | ^ resizeVectors.c:108:3: note: previous statement is here 108 | for (i = 0; i < len_new; i++) | ^ 4 warnings generated. clang-21 -std=gnu23 -I"/home/hornik/tmp/R-d-clang-21/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tree_structures.c -o tree_structures.o clang-21 -std=gnu23 -shared -L/home/hornik/tmp/R-d-clang-21/lib -Wl,-O1 -o BAS.so E_ZS.o MH-funs.o ZS_approx_full_np.o ZS_approx_null_np.o amcmc-funs.o bayesglm.o bayesreg.o betapriorfamily.o cch.o dch1up.o family.o glm_deterministic.o glm_fit.o glm_mcmc.o glm_mcmc_grow.o glm_mcmcbas.o glm_sampleworep.o glm_sampleworep_grow.o hg_approx_null_np.o hyp1F1.o hyp2f1.o hypergeometric1F1.o hypergeometric2F1.o init.o lm_amcmc.o lm_amcmc_growable.o lm_deterministic.o lm_mcmc.o lm_mcmc_grow.o lm_mcmcbas.o lm_sampleworep-grow.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o resizeVectors.o tree_structures.o -llapack -L/home/hornik/tmp/R-d-clang-21/lib -lRblas -L/usr/lib/llvm-21/lib/clang/21/lib/linux -L/usr/lib/llvm-21/lib -lflang_rt.runtime -lm -L/home/hornik/tmp/R-d-clang-21/lib -lR installing to /srv/hornik/tmp/CRAN_pretest/BAS.Rcheck/00LOCK-BAS/00new/BAS/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAS)