* installing *source* package 'BAS' ... ** using staged installation ** libs using C compiler: 'gcc.exe (GCC) 13.3.0' using Fortran compiler: 'GNU Fortran (GCC) 13.3.0' gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c E_ZS.c -o E_ZS.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c MH-funs.c -o MH-funs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ZS_approx_full_np.c -o ZS_approx_full_np.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c ZS_approx_null_np.c -o ZS_approx_null_np.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c amcmc-funs.c -o amcmc-funs.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayesglm.c -o bayesglm.o bayesglm.c: In function 'glm_fit': bayesglm.c:219:17: warning: 'disp' may be used uninitialized [-Wmaybe-uninitialized] 219 | se[j] = sqrt(se[j]*disp); | ^~~~~~~~~~~~~~~~ bayesglm.c:95:10: note: 'disp' was declared here 95 | double disp; | ^~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c bayesreg.c -o bayesreg.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c betapriorfamily.c -o betapriorfamily.o betapriorfamily.c: In function 'intrinsic_glm_shrinkage': betapriorfamily.c:239:38: warning: unused variable 'u' [-Wunused-variable] 239 | double a, b, s, r, v, theta, n, p, u, shrinkage; | ^ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c cch.c -o cch.o gfortran -pedantic -O2 -mfpmath=sse -msse2 -mstackrealign -c dch1up.f -o dch1up.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c family.c -o family.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_deterministic.c -o glm_deterministic.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_fit.c -o glm_fit.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_lpy.c -o glm_lpy.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_mcmc.c -o glm_mcmc.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_mcmcbas.c -o glm_mcmcbas.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c glm_sampleworep.c -o glm_sampleworep.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hg_approx_null_np.c -o hg_approx_null_np.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hyp1F1.c -o hyp1F1.o hyp1F1.c:99: warning: "DOMAIN" redefined 99 | #define DOMAIN 1 /* argument domain error */ | In file included from D:/RCompile/recent/R/include/Rmath.h:43, from hyp1F1.c:69: d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition 29 | #define DOMAIN _DOMAIN | hyp1F1.c:100: warning: "SING" redefined 100 | #define SING 2 /* argument singularity */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition 30 | #define SING _SING | hyp1F1.c:101: warning: "OVERFLOW" redefined 101 | #define OVERFLOW 3 /* overflow range error */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition 31 | #define OVERFLOW _OVERFLOW | hyp1F1.c:102: warning: "UNDERFLOW" redefined 102 | #define UNDERFLOW 4 /* underflow range error */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition 32 | #define UNDERFLOW _UNDERFLOW | hyp1F1.c:103: warning: "TLOSS" redefined 103 | #define TLOSS 5 /* total loss of precision */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition 33 | #define TLOSS _TLOSS | hyp1F1.c:104: warning: "PLOSS" redefined 104 | #define PLOSS 6 /* partial loss of precision */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition 34 | #define PLOSS _PLOSS | gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hyp2f1.c -o hyp2f1.o hyp2f1.c:89: warning: "DOMAIN" redefined 89 | #define DOMAIN 1 /* argument domain error */ | In file included from D:/RCompile/recent/R/include/R.h:45, from hyp2f1.c:70: d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition 29 | #define DOMAIN _DOMAIN | hyp2f1.c:90: warning: "SING" redefined 90 | #define SING 2 /* argument singularity */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition 30 | #define SING _SING | hyp2f1.c:91: warning: "OVERFLOW" redefined 91 | #define OVERFLOW 3 /* overflow range error */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition 31 | #define OVERFLOW _OVERFLOW | hyp2f1.c:92: warning: "UNDERFLOW" redefined 92 | #define UNDERFLOW 4 /* underflow range error */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition 32 | #define UNDERFLOW _UNDERFLOW | hyp2f1.c:93: warning: "TLOSS" redefined 93 | #define TLOSS 5 /* total loss of precision */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition 33 | #define TLOSS _TLOSS | hyp2f1.c:94: warning: "PLOSS" redefined 94 | #define PLOSS 6 /* partial loss of precision */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition 34 | #define PLOSS _PLOSS | gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hypergeometric1F1.c -o hypergeometric1F1.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c hypergeometric2F1.c -o hypergeometric2F1.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c init.c -o init.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_amcmc.c -o lm_amcmc.o lm_amcmc.c: In function 'amcmc': lm_amcmc.c:260:34: warning: 'new_loc' may be used uninitialized [-Wmaybe-uninitialized] 260 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_amcmc.c:165:13: note: 'new_loc' was declared here 165 | int new_loc; | ^~~~~~~ lm_amcmc.c:357:34: warning: 'postold' may be used uninitialized [-Wmaybe-uninitialized] 357 | if (!IS) MH = exp(postnew - postold + log(pigammaold) - log(pigammanew)); | ~~~~~~~~^~~~~~~~~ lm_amcmc.c:50:46: note: 'postold' was declared here 50 | R2_m, RSquareFull, logmargy, postold, postnew; | ^~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_deterministic.c -o lm_deterministic.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_mcmc.c -o lm_mcmc.o lm_mcmc.c: In function 'mcmc_new': lm_mcmc.c:226:34: warning: 'new_loc' may be used uninitialized [-Wmaybe-uninitialized] 226 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmc.c:132:13: note: 'new_loc' was declared here 132 | int new_loc; | ^~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_mcmcbas.c -o lm_mcmcbas.o lm_mcmcbas.c: In function 'mcmcbas': lm_mcmcbas.c:283:22: warning: 'new_loc' may be used uninitialized [-Wmaybe-uninitialized] 283 | INTEGER(counts)[old_loc] += 1; | ~~~~~~~~~~~~~~~^~~~~~~~~ lm_mcmcbas.c:181:9: note: 'new_loc' was declared here 181 | int new_loc; | ^~~~~~~ gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c lm_sampleworep.c -o lm_sampleworep.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mem.c -o mem.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c model_probabilities.c -o model_probabilities.o gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mtherr.c -o mtherr.o mtherr.c:67: warning: "DOMAIN" redefined 67 | #define DOMAIN 1 /* argument domain error */ | In file included from D:/RCompile/recent/R/include/R.h:45, from mtherr.c:61: d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:29: note: this is the location of the previous definition 29 | #define DOMAIN _DOMAIN | mtherr.c:68: warning: "SING" redefined 68 | #define SING 2 /* argument singularity */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:30: note: this is the location of the previous definition 30 | #define SING _SING | mtherr.c:69: warning: "OVERFLOW" redefined 69 | #define OVERFLOW 3 /* overflow range error */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:31: note: this is the location of the previous definition 31 | #define OVERFLOW _OVERFLOW | mtherr.c:70: warning: "UNDERFLOW" redefined 70 | #define UNDERFLOW 4 /* underflow range error */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:32: note: this is the location of the previous definition 32 | #define UNDERFLOW _UNDERFLOW | mtherr.c:71: warning: "TLOSS" redefined 71 | #define TLOSS 5 /* total loss of precision */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:33: note: this is the location of the previous definition 33 | #define TLOSS _TLOSS | mtherr.c:72: warning: "PLOSS" redefined 72 | #define PLOSS 6 /* partial loss of precision */ | d:\rtools44\x86_64-w64-mingw32.static.posix\include\math.h:34: note: this is the location of the previous definition 34 | #define PLOSS _PLOSS | gcc -I"D:/RCompile/recent/R/include" -DNDEBUG -I"d:/rtools44/x86_64-w64-mingw32.static.posix/include" -pedantic -Wstrict-prototypes -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c tree_structures.c -o tree_structures.o gcc -shared -s -static-libgcc -o BAS.dll tmp.def E_ZS.o MH-funs.o ZS_approx_full_np.o ZS_approx_null_np.o amcmc-funs.o bayesglm.o bayesreg.o betapriorfamily.o cch.o dch1up.o family.o glm_deterministic.o glm_fit.o glm_lpy.o glm_mcmc.o glm_mcmcbas.o glm_sampleworep.o hg_approx_null_np.o hyp1F1.o hyp2f1.o hypergeometric1F1.o hypergeometric2F1.o init.o lm_amcmc.o lm_deterministic.o lm_mcmc.o lm_mcmcbas.o lm_sampleworep.o mem.o model_probabilities.o mtherr.o tree_structures.o -LD:/RCompile/recent/R/bin/x64 -lRlapack -LD:/RCompile/recent/R/bin/x64 -lRblas -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -Ld:/rtools44/x86_64-w64-mingw32.static.posix/lib -lgfortran -lm -lquadmath -LD:/RCompile/recent/R/bin/x64 -lR installing to d:/RCompile/CRANincoming/R-devel/lib/00LOCK-BAS/00new/BAS/libs/x64 ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BAS)