context("model priors") test_that("bernoulli", { data(Hald) hald_unif <- bas.lm(Y ~ ., data = Hald, prior = "g-prior", modelprior = uniform() ) hald_ber <- bas.lm(Y ~ ., data = Hald, prior = "g-prior", modelprior = Bernoulli(probs = .5) ) expect_equal(hald_unif$probne0, hald_ber$probne0) hald_ber1 <- bas.lm(Y ~ ., data = Hald, prior = "g-prior", modelprior = Bernoulli(probs = .4) ) hald_ber2 <- bas.lm(Y ~ X1 + X2 + X3 + X4, data = Hald, prior = "g-prior", modelprior = Bernoulli(probs = rep(.4, 4)) ) expect_equal(hald_ber1$probne0, hald_ber2$probne0) }) test_that("truncated prior", { hald_tr_power <- bas.lm(Y ~ ., data = Hald, prior = "g-prior", modelprior = tr.power.prior(kappa=2, 2)) expect_equal(1, sum(hald_tr_power$postprobs)) expect_no_error(expect_equal(0, sum(hald_tr_power$postprobs <= 0.0))) }) test_that("Bernoulli hereditary prior", { expect_error(bas.lm(Y ~ ., data = Hald, prior = "g-prior", modelprior = Bernoulli.heredity(.5, NULL)) ) }) test_that("Always include changes model-prior", { res <- bas.lm(Y ~ ., data = Hald, modelprior = beta.binomial(1, 1), include.always = ~ 1 + X1 + X2) ord <- order(lengths(res$which)) expect_equal( object = res$priorprobs[ord], expected = c(0.333333333333333, 0.166666666666667, 0.166666666666667, 0.333333333333333) ) }) test_that("Check if model-prior is of class prior", { expect_error(bas.lm(Y ~ ., data = Hald, modelprior = c(.25, .25, .25, .25), include.always = ~ 1 + X1 + X2)) expect_error(bas.glm(Y ~ ., data = Hald, modelprior = c(.25, .25, .25, .25), include.always = ~ 1 + X1 + X2, family=poisson())) })