downloading reverse dependencies ‘AuxSurvey’, ‘bartMan’, ‘bartXViz’, ‘bmabart’, ‘borrowr’, ‘CIMTx’, ‘cjbart’, ‘paths’, ‘RCTrep’, ‘riAFTBART’, ‘SAMTx’, ‘tidytreatment’, ‘varPro’, ‘bark’, ‘condvis2’, ‘CRE’, ‘familiar’, ‘MachineShop’, ‘StratifiedMedicine’ trying URL 'file:///data/Repositories/CRAN/src/contrib/AuxSurvey_1.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bartMan_0.2.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bartXViz_1.0.9.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bmabart_2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/borrowr_0.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CIMTx_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/cjbart_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/paths_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/RCTrep_1.2.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/riAFTBART_0.3.3.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/SAMTx_0.3.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/tidytreatment_0.3.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/varPro_2.0.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/bark_1.0.5.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/condvis2_0.1.2.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/CRE_0.2.7.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/familiar_1.5.0.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/MachineShop_3.9.1.tar.gz' trying URL 'file:///data/Repositories/CRAN/src/contrib/StratifiedMedicine_1.0.5.tar.gz' installing dependencies ‘BART’, ‘bartCause’, ‘censored’, ‘DendSer’, ‘fdm2id’, ‘geex’, ‘gggenes’, ‘ggparty’, ‘glmnetUtils’, ‘harmonicmeanp’, ‘isotree’, ‘laGP’, ‘lvplot’, ‘ParBayesianOptimization’, ‘power.transform’, ‘praznik’, ‘PSweight’, ‘rBayesianOptimization’, ‘RRF’, ‘rstream’, ‘scagnostics’, ‘stan4bart’, ‘survRM2’, ‘tmle’ Warning: package ‘ParBayesianOptimization’ is not available for this version of R A version of this package for your version of R might be available elsewhere, see the ideas at https://cran.r-project.org/doc/manuals/r-devel/R-admin.html#Installing-packages also installing the dependencies ‘arulesViz’, ‘FMStable’ begin installing package ‘arulesViz’ begin installing package ‘FMStable’ begin installing package ‘DendSer’ begin installing package ‘lvplot’ begin installing package ‘gggenes’ begin installing package ‘tmle’ begin installing package ‘PSweight’ begin installing package ‘geex’ begin installing package ‘RRF’ begin installing package ‘stan4bart’ begin installing package ‘bartCause’ begin installing package ‘scagnostics’ begin installing package ‘glmnetUtils’ begin installing package ‘rstream’ begin installing package ‘isotree’ begin installing package ‘laGP’ begin installing package ‘power.transform’ begin installing package ‘praznik’ begin installing package ‘censored’ begin installing package ‘rBayesianOptimization’ begin installing package ‘ggparty’ begin installing package ‘survRM2’ begin installing package ‘BART’ * installing *source* package ‘rBayesianOptimization’ ... ** this is package ‘rBayesianOptimization’ version ‘1.2.2’ ** package ‘rBayesianOptimization’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rBayesianOptimization) * installing *source* package ‘scagnostics’ ... ** this is package ‘scagnostics’ version ‘0.2-6’ ** package ‘scagnostics’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scagnostics) * installing *source* package ‘FMStable’ ... ** this is package ‘FMStable’ version ‘0.1-4’ ** package ‘FMStable’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpgzBwHt/R.INSTALL58b3946227db5/FMStable/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c FMStable.c -o FMStable.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o FMStable.so FMStable.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpgzBwHt/R.INSTALL58b3946227db5/FMStable/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-FMStable/00new/FMStable/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (FMStable) begin installing package ‘harmonicmeanp’ * installing *source* package ‘DendSer’ ... ** this is package ‘DendSer’ version ‘1.0.2’ ** package ‘DendSer’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmps0W5Sv/R.INSTALL58b446fcc60fb/DendSer/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c DendSer_init.c -o DendSer_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c carct.c -o carct.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cbar.c -o cbar.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c clpl.c -o clpl.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c cpl.c -o cpl.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o DendSer.so DendSer_init.o carct.o cbar.o clpl.o cpl.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmps0W5Sv/R.INSTALL58b446fcc60fb/DendSer/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-DendSer/00new/DendSer/libs ** R ** demo ** byte-compile and prepare package for lazy loading Warning in seriation::set_criterion_method("dist", "BAR", criterion_method_dist_BAR, : Entry with name ‘BAR’ already exists! Modifying entry. ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (DendSer) * installing *source* package ‘rstream’ ... ** this is package ‘rstream’ version ‘1.3.7’ ** package ‘rstream’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpX0Dng2/R.INSTALL58b6f2126716f/rstream/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_RNG.c -o R_RNG.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c R_RngStreams.c -o R_RngStreams.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RngStreams.c -o RngStreams.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o rstream.so R_RNG.o R_RngStreams.o RngStreams.o init.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpX0Dng2/R.INSTALL58b6f2126716f/rstream/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-rstream/00new/rstream/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rstream) * installing *source* package ‘geex’ ... ** this is package ‘geex’ version ‘1.1.1’ ** package ‘geex’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (geex) * installing *source* package ‘harmonicmeanp’ ... ** this is package ‘harmonicmeanp’ version ‘3.0.1’ ** package ‘harmonicmeanp’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (harmonicmeanp) * installing *source* package ‘bartCause’ ... ** this is package ‘bartCause’ version ‘1.0-10’ ** package ‘bartCause’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (bartCause) * installing *source* package ‘survRM2’ ... ** this is package ‘survRM2’ version ‘1.0-4’ ** package ‘survRM2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (survRM2) * installing *source* package ‘gggenes’ ... ** this is package ‘gggenes’ version ‘0.6.0’ ** package ‘gggenes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gggenes) * installing *source* package ‘power.transform’ ... ** this is package ‘power.transform’ version ‘1.0.3’ ** package ‘power.transform’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (power.transform) * installing *source* package ‘RRF’ ... ** this is package ‘RRF’ version ‘1.9.4.1’ ** package ‘RRF’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using Fortran compiler: ‘GNU Fortran (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpOnH7XK/R.INSTALL58b493e713085/RRF/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c RRF_init.c -o RRF_init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c classTree.c -o classTree.o classTree.c: In function ‘predictClassTree’: classTree.c:454:47: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 454 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ classTree.c:425:22: note: ‘cbestsplit’ was declared here 425 | int m, i, j, k, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regTree.c -o regTree.o regTree.c: In function ‘predictRegTree’: regTree.c:335:31: warning: ‘cbestsplit’ may be used uninitialized [-Wmaybe-uninitialized] 335 | k = cbestsplit[(int) x[m + i * mdim] - 1 + k * maxcat] ? | ^ regTree.c:308:22: note: ‘cbestsplit’ was declared here 308 | int i, j, k, m, *cbestsplit; | ^~~~~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c regrf.c -o regrf.o regrf.c: In function ‘regRF’: regrf.c:64:9: warning: variable ‘flagReg’ set but not used [-Wunused-but-set-variable] 64 | int flagReg;//new | ^~~~~~~ regrf.c:54:25: warning: variable ‘averrb’ set but not used [-Wunused-but-set-variable] 54 | double errts = 0.0, averrb, meanY, meanYts, varY, varYts, r, xrand, | ^~~~~~ regrf.c:219:25: warning: ‘ytree’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:57:36: note: ‘ytree’ was declared here 57 | double *yb, *xtmp, *xb, *ytr, *ytree, *tgini; | ^~~~~ regrf.c:219:25: warning: ‘nodexts’ may be used uninitialized [-Wmaybe-uninitialized] 219 | predictRegTree(xts, ntest, mdim, lDaughter + idx, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 | rDaughter + idx, nodestatus + idx, ytree, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 | upper + idx, avnode + idx, | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 | mbest + idx, treeSize[j], cat, *maxcat, nodexts); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ regrf.c:63:30: note: ‘nodexts’ was declared here 63 | int *in, *nind, *nodex, *nodexts; | ^~~~~~~ gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rf.c -o rf.o rf.c: In function ‘classRF’: rf.c:110:10: warning: variable ‘tp’ set but not used [-Wunused-but-set-variable] 110 | *tp, *wr; | ^~ rf.c:92:15: warning: variable ‘nimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:92:9: warning: variable ‘mimp’ set but not used [-Wunused-but-set-variable] 92 | mimp, nimp, near, nuse, noutall, nrightall, nrightimpall, | ^~~~ rf.c:437:13: warning: ‘oobpair’ may be used uninitialized [-Wmaybe-uninitialized] 437 | computeProximity(prox, oobprox, nodex, jin, oobpair, near); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:102:43: note: ‘oobpair’ was declared here 102 | *at, *a, *b, *mind, *nind, *jts, *oobpair; | ^~~~~~~ rf.c:385:25: warning: ‘nclts’ may be used uninitialized [-Wmaybe-uninitialized] 385 | TestSetError(countts, jts, clts, outclts, ntest, nclass, jb+1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 | errts + jb*(nclass+1), *labelts, nclts, cut); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rf.c:96:29: note: ‘nclts’ was declared here 96 | *nrightimp, *nout, *nclts, Ntree; | ^~~~~ gfortran-15 -fpic -g -O2 -Wall -pedantic -mtune=native -c rfsub.f -o rfsub.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rfutils.c -o rfutils.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o RRF.so RRF_init.o classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -lgfortran -lm -lquadmath -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpOnH7XK/R.INSTALL58b493e713085/RRF/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-RRF/00new/RRF/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (RRF) * installing *source* package ‘glmnetUtils’ ... ** this is package ‘glmnetUtils’ version ‘1.1.9’ ** package ‘glmnetUtils’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmnetUtils) * installing *source* package ‘praznik’ ... ** this is package ‘praznik’ version ‘12.0.0’ ** package ‘praznik’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcI0tFu/R.INSTALL58b7e225ff7b0/praznik/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c praznik.c -o praznik.o In file included from praznik.c:18: In function ‘fillHt’, inlined from ‘C_tri._omp_fn.0’ at trips.h:100:5: ht.h:31:6: warning: ‘nab’ may be used uninitialized [-Wmaybe-uninitialized] 31 | int Neff=nA*nB; | ^~~~ In file included from praznik.c:48: trips.h: In function ‘C_tri._omp_fn.0’: trips.h:85:19: note: ‘nab’ was declared here 85 | int oa=-1,ob=-1,nab; | ^~~ gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o praznik.so praznik.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcI0tFu/R.INSTALL58b7e225ff7b0/praznik/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-praznik/00new/praznik/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praznik) * installing *source* package ‘tmle’ ... ** this is package ‘tmle’ version ‘2.1.1’ ** package ‘tmle’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tmle) * installing *source* package ‘ggparty’ ... ** this is package ‘ggparty’ version ‘1.0.0.1’ ** package ‘ggparty’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ggparty) * installing *source* package ‘laGP’ ... ** this is package ‘laGP’ version ‘1.5-9’ ** package ‘laGP’ successfully unpacked and MD5 sums checked ** using staged installation ** libs make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmpo6hKpd/R.INSTALL58b845b1ea943/laGP/src' /home/hornik/tmp/R/bin/R CMD SHLIB -o laGP.so *.c using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ make[2]: Entering directory '/home/hornik/tmp/scratch/Rtmpo6hKpd/R.INSTALL58b845b1ea943/laGP/src' gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar.c -o covar.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c covar_sep.c -o covar_sep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c davies.c -o davies.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gamma.c -o gamma.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gp.c -o gp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c gp_sep.c -o gp_sep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ieci.c -o ieci.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laGP.c -o laGP.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c laGP_sep.c -o laGP_sep.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c linalg.c -o linalg.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c matrix.c -o matrix.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c order.c -o order.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rbetter.c -o rbetter.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rhelp.c -o rhelp.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -DRPRINT -fopenmp -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c util.c -o util.o gcc-15 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o laGP.so covar.o covar_sep.o davies.o gamma.o gp.o gp_sep.o ieci.o init.o laGP.o laGP_sep.o linalg.o matrix.o order.o rbetter.o rhelp.o util.o -llapack -L/home/hornik/tmp/R/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R/lib -lR make[2]: Leaving directory '/home/hornik/tmp/scratch/Rtmpo6hKpd/R.INSTALL58b845b1ea943/laGP/src' make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmpo6hKpd/R.INSTALL58b845b1ea943/laGP/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-laGP/00new/laGP/libs ** R ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (laGP) * installing *source* package ‘censored’ ... ** this is package ‘censored’ version ‘0.3.3’ ** package ‘censored’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (censored) * installing *source* package ‘arulesViz’ ... ** this is package ‘arulesViz’ version ‘1.5.4’ ** package ‘arulesViz’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (arulesViz) begin installing package ‘fdm2id’ * installing *source* package ‘PSweight’ ... ** this is package ‘PSweight’ version ‘2.1.2’ ** package ‘PSweight’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (PSweight) * installing *source* package ‘fdm2id’ ... ** this is package ‘fdm2id’ version ‘0.9.9’ ** package ‘fdm2id’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (fdm2id) * installing *source* package ‘lvplot’ ... ** this is package ‘lvplot’ version ‘0.2.2’ ** package ‘lvplot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lvplot) * installing *source* package ‘BART’ ... ** this is package ‘BART’ version ‘2.9.10’ ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to support OpenMP... -fopenmp configure: creating ./config.status config.status: creating src/Makevars ** libs using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpEdEb7D/R.INSTALL58b8c5f63ecbc/BART/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bart.cpp -o bart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bartfuns.cpp -o bartfuns.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c bd.cpp -o bd.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cabart.cpp -o cabart.o cabart.cpp: In function ‘SEXPREC* cabart(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: cabart.cpp:114:9: warning: unused variable ‘grp’ [-Wunused-variable] 114 | int *grp = &_grp[0]; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cgbart.cpp -o cgbart.o cgbart.cpp: In function ‘SEXPREC* cgbart(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: cgbart.cpp:111:9: warning: unused variable ‘grp’ [-Wunused-variable] 111 | int *grp = &_grp[0]; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c clbart.cpp -o clbart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpbart.cpp -o cpbart.o cpbart.cpp: In function ‘SEXPREC* cpbart(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: cpbart.cpp:107:9: warning: unused variable ‘grp’ [-Wunused-variable] 107 | int *grp = &_grp[0]; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cpwbart.cpp -o cpwbart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c cwbart.cpp -o cwbart.o cwbart.cpp: In function ‘SEXPREC* cwbart(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: cwbart.cpp:109:9: warning: unused variable ‘grp’ [-Wunused-variable] 109 | int *grp = &_grp[0]; | ^~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c heterbart.cpp -o heterbart.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c heterbartfuns.cpp -o heterbartfuns.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c heterbd.cpp -o heterbd.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c init.c -o init.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c lambda.cpp -o lambda.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c mc_cores_openmp.cpp -o mc_cores_openmp.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rtgamma.cpp -o rtgamma.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c rtnorm.cpp -o rtnorm.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c tree.cpp -o tree.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -c treefuns.cpp -o treefuns.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o BART.so bart.o bartfuns.o bd.o cabart.o cgbart.o clbart.o cpbart.o cpwbart.o cwbart.o heterbart.o heterbartfuns.o heterbd.o init.o lambda.o mc_cores_openmp.o rtgamma.o rtnorm.o tree.o treefuns.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpEdEb7D/R.INSTALL58b8c5f63ecbc/BART/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-BART/00new/BART/libs ** R ** data ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BART) * installing *source* package ‘stan4bart’ ... ** this is package ‘stan4bart’ version ‘0.0-11’ ** package ‘stan4bart’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed checking how to run the C++ preprocessor... g++-15 -std=gnu++17 -E checking whether the compiler supports GNU C++... (cached) yes checking whether g++-15 -std=gnu++17 accepts -g... (cached) yes checking for g++-15 -std=gnu++17 option to enable C++11 features... (cached) none needed checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for gcc... gcc-15 checking whether the compiler supports GNU C... yes checking whether gcc-15 accepts -g... yes checking for gcc-15 option to enable C11 features... none needed checking for x86 cpuid output... unknown checking for x86-AVX xgetbv output... unknown checking for x86 cpuid 0x00000000 output... 14:756e6547:6c65746e:49656e69 checking for x86 cpuid 0x00000001 output... 406f1:11200800:7ffefbff:bfebfbff checking whether SSE2 is supported by the processor... yes checking whether SSE2 is supported by the processor and OS... yes checking whether C++ compiler accepts -msse2... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for malloc.h... yes checking size of size_t... 8 checking alignment of void*... 8 checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for working posix_memalign... yes checking for ffs... yes configure: creating ./config.status config.status: creating src/Makevars config.status: creating src/config.h ** libs specified C++17 using C compiler: ‘gcc-15 (Debian 15.2.0-12) 15.2.0’ using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpZRtnF7/R.INSTALL58b674ac5b7c9/stan4bart/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c bart_util.cpp -o bart_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c init.cpp -o init.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c misc_string.c -o misc_string.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_bounds.c -o rc_bounds.o gcc-15 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rc_util.c -o rc_util.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/BH/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppEigen/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/dbarts/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O2 -Wall -pedantic -mtune=native -c stan_sampler.cpp -o stan_sampler.o In file included from include/stan/model/model_header.hpp:15, from stan_files/continuous.hpp:43, from stan_sampler.cpp:16: include/stan/model/model_base_crtp.hpp:88:17: warning: ‘double stan::model::model_base_crtp::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 88 | inline double log_prob(Eigen::VectorXd& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:144:17: warning: ‘double stan::model::model_base_crtp::log_prob(std::vector&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 144 | inline double log_prob(std::vector& theta, std::vector& theta_i, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:93:20: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(Eigen::Matrix, -1, 1>&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 93 | inline math::var log_prob(Eigen::Matrix& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:149:20: warning: ‘stan::math::var stan::model::model_base_crtp::log_prob(std::vector, std::allocator > >&, std::vector&, std::ostream*) const [with M = continuous_model_namespace::continuous_model; stan::math::var = stan::math::var_value; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 149 | inline math::var log_prob(std::vector& theta, | ^~~~~~~~ stan_files/continuous.hpp:3382:15: note: by ‘T_ continuous_model_namespace::continuous_model::log_prob(Eigen::Matrix&, std::ostream*) const’ 3382 | inline T_ log_prob(Eigen::Matrix& params_r, | ^~~~~~~~ include/stan/model/model_base_crtp.hpp:195:8: warning: ‘void stan::model::model_base_crtp::write_array(boost::random::ecuyer1988&, std::vector&, std::vector&, std::vector&, bool, bool, std::ostream*) const [with M = continuous_model_namespace::continuous_model; boost::random::ecuyer1988 = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 195 | void write_array(boost::ecuyer1988& rng, std::vector& theta, | ^~~~~~~~~~~ stan_files/continuous.hpp:3338:17: note: by ‘void continuous_model_namespace::continuous_model::write_array(RNG&, Eigen::Matrix&, Eigen::Matrix&, bool, bool, std::ostream*) const’ 3338 | inline void write_array(RNG& base_rng, | ^~~~~~~~~~~ include/stan/model/model_base_crtp.hpp:133:8: warning: ‘void stan::model::model_base_crtp::write_array(boost::random::ecuyer1988&, Eigen::VectorXd&, Eigen::VectorXd&, bool, bool, std::ostream*) const [with M = continuous_model_namespace::continuous_model; boost::random::ecuyer1988 = boost::random::additive_combine_engine, boost::random::linear_congruential_engine >; Eigen::VectorXd = Eigen::Matrix; std::ostream = std::basic_ostream]’ was hidden [-Woverloaded-virtual=] 133 | void write_array(boost::ecuyer1988& rng, Eigen::VectorXd& theta, | ^~~~~~~~~~~ stan_files/continuous.hpp:3338:17: note: by ‘void continuous_model_namespace::continuous_model::write_array(RNG&, Eigen::Matrix&, Eigen::Matrix&, bool, bool, std::ostream*) const’ 3338 | inline void write_array(RNG& base_rng, | ^~~~~~~~~~~ g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o stan4bart.so bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -L/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/lib/ -Wl,-rpath,/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpZRtnF7/R.INSTALL58b674ac5b7c9/stan4bart/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-stan4bart/00new/stan4bart/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (stan4bart) * installing *source* package ‘isotree’ ... ** this is package ‘isotree’ version ‘0.6.1-4’ ** package ‘isotree’ successfully unpacked and MD5 sums checked ** using staged installation checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++-15 -std=gnu++17 accepts -g... yes checking for g++-15 -std=gnu++17 option to enable C++11 features... none needed configure: creating ./config.status config.status: creating src/Makevars ** libs specified C++17 using C++ compiler: ‘g++-15 (Debian 15.2.0-12) 15.2.0’ using C++17 make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpwtcF3x/R.INSTALL58b7a3df65cea/isotree/src' g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c Rwrapper.cpp -o Rwrapper.o In file included from headers_joined.h:73, from Rwrapper.cpp:76: In function ‘double extract_spR(const PredictionData&, const sparse_ix*, const sparse_ix*, std::size_t, std::size_t, std::size_t) [with PredictionData = PredictionData; sparse_ix = int]’, inlined from ‘void traverse_hplane(std::vector&, ExtIsoForest&, PredictionData&, double&, std::vector*, ImputedData*, sparse_ix*, double*, std::size_t) [with PredictionData = PredictionData; sparse_ix = int; ImputedData = ImputedData]’ at predict.h:1156:51: predict.h:1920:38: warning: ‘lb’ may be used uninitialized [-Wmaybe-uninitialized] 1920 | if (row_end == row_st || col_num < lb || col_num > ub) | ~~~~~~~~^~~~ predict.h: In function ‘void traverse_hplane(std::vector&, ExtIsoForest&, PredictionData&, double&, std::vector*, ImputedData*, sparse_ix*, double*, std::size_t) [with PredictionData = PredictionData; sparse_ix = int; ImputedData = ImputedData]’: predict.h:1104:12: note: ‘lb’ was declared here 1104 | size_t lb, ub; | ^~ In function ‘double extract_spR(const PredictionData&, const sparse_ix*, const sparse_ix*, std::size_t, std::size_t, std::size_t) [with PredictionData = PredictionData; sparse_ix = int]’, inlined from ‘void traverse_hplane(std::vector&, ExtIsoForest&, PredictionData&, double&, std::vector*, ImputedData*, sparse_ix*, double*, std::size_t) [with PredictionData = PredictionData; sparse_ix = int; ImputedData = ImputedData]’ at predict.h:1156:51: predict.h:1920:43: warning: ‘ub’ may be used uninitialized [-Wmaybe-uninitialized] 1920 | if (row_end == row_st || col_num < lb || col_num > ub) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ predict.h: In function ‘void traverse_hplane(std::vector&, ExtIsoForest&, PredictionData&, double&, std::vector*, ImputedData*, sparse_ix*, double*, std::size_t) [with PredictionData = PredictionData; sparse_ix = int; ImputedData = ImputedData]’: predict.h:1104:16: note: ‘ub’ was declared here 1104 | size_t lb, ub; | ^~ In function ‘double extract_spR(const PredictionData&, const sparse_ix*, const sparse_ix*, std::size_t, std::size_t, std::size_t) [with PredictionData = PredictionData; sparse_ix = int]’, inlined from ‘void traverse_hplane(std::vector&, ExtIsoForest&, PredictionData&, double&, std::vector*, ImputedData*, sparse_ix*, double*, std::size_t) [with PredictionData = PredictionData; sparse_ix = int; ImputedData = ImputedData]’ at predict.h:1156:51, inlined from ‘_Z30impute_missing_values_internalIdieEvPT_PibS1_PT0_S4_miP9IsoForestP12ExtIsoForestR7Imputer._omp_fn.1’ at impute.h:263:36: predict.h:1920:38: warning: ‘lb’ may be used uninitialized [-Wmaybe-uninitialized] 1920 | if (row_end == row_st || col_num < lb || col_num > ub) | ~~~~~~~~^~~~ predict.h: In function ‘_Z30impute_missing_values_internalIdieEvPT_PibS1_PT0_S4_miP9IsoForestP12ExtIsoForestR7Imputer._omp_fn.1’: predict.h:1104:12: note: ‘lb’ was declared here 1104 | size_t lb, ub; | ^~ In function ‘double extract_spR(const PredictionData&, const sparse_ix*, const sparse_ix*, std::size_t, std::size_t, std::size_t) [with PredictionData = PredictionData; sparse_ix = int]’, inlined from ‘void traverse_hplane(std::vector&, ExtIsoForest&, PredictionData&, double&, std::vector*, ImputedData*, sparse_ix*, double*, std::size_t) [with PredictionData = PredictionData; sparse_ix = int; ImputedData = ImputedData]’ at predict.h:1156:51, inlined from ‘_Z30impute_missing_values_internalIdieEvPT_PibS1_PT0_S4_miP9IsoForestP12ExtIsoForestR7Imputer._omp_fn.1’ at impute.h:263:36: predict.h:1920:43: warning: ‘ub’ may be used uninitialized [-Wmaybe-uninitialized] 1920 | if (row_end == row_st || col_num < lb || col_num > ub) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ predict.h: In function ‘_Z30impute_missing_values_internalIdieEvPT_PibS1_PT0_S4_miP9IsoForestP12ExtIsoForestR7Imputer._omp_fn.1’: predict.h:1104:16: note: ‘ub’ was declared here 1104 | size_t lb, ub; | ^~ In file included from headers_joined.h:65: In function ‘double find_split_full_gain_weighted(real_t*, std::size_t, std::size_t, std::size_t*, std::size_t*, std::size_t, bool, double*, std::size_t, double*, std::size_t*, std::size_t*, double*, double*, std::size_t&, double&, bool, mapping&) [with real_t = double; mapping = double* __restrict__; ldouble_safe = double]’, inlined from ‘double eval_guided_crit_weighted(double*, std::size_t, GainCriterion, double, bool, double*, double&, double&, double&, double*, std::size_t*, std::size_t*, std::size_t*, std::size_t, bool, double*, std::size_t, double*, std::size_t*, std::size_t*) [with ldouble_safe = double]’ at crit.h:3166:85: crit.h:2323:45: warning: ‘ignored’ may be used uninitialized [-Wmaybe-uninitialized] 2323 | split_point = midpoint(x[ix_arr[split_ix]], x[ix_arr[split_ix+1]]); | ~~~~~~~~~~~~~~~^ crit.h: In function ‘double eval_guided_crit_weighted(double*, std::size_t, GainCriterion, double, bool, double*, double&, double&, double&, double*, std::size_t*, std::size_t*, std::size_t*, std::size_t, bool, double*, std::size_t, double*, std::size_t*, std::size_t*) [with ldouble_safe = double]’: crit.h:3165:16: note: ‘ignored’ was declared here 3165 | size_t ignored; | ^~~~~~~ In function ‘double find_split_full_gain_weighted(real_t*, std::size_t, std::size_t, std::size_t*, std::size_t*, std::size_t, bool, double*, std::size_t, double*, std::size_t*, std::size_t*, double*, double*, std::size_t&, double&, bool, mapping&) [with real_t = double; mapping = double* __restrict__; ldouble_safe = long double]’, inlined from ‘double eval_guided_crit_weighted(double*, std::size_t, GainCriterion, double, bool, double*, double&, double&, double&, double*, std::size_t*, std::size_t*, std::size_t*, std::size_t, bool, double*, std::size_t, double*, std::size_t*, std::size_t*) [with ldouble_safe = long double]’ at crit.h:3166:85: crit.h:2323:45: warning: ‘ignored’ may be used uninitialized [-Wmaybe-uninitialized] 2323 | split_point = midpoint(x[ix_arr[split_ix]], x[ix_arr[split_ix+1]]); | ~~~~~~~~~~~~~~~^ crit.h: In function ‘double eval_guided_crit_weighted(double*, std::size_t, GainCriterion, double, bool, double*, double&, double&, double&, double*, std::size_t*, std::size_t*, std::size_t*, std::size_t, bool, double*, std::size_t, double*, std::size_t*, std::size_t*) [with ldouble_safe = long double]’: crit.h:3165:16: note: ‘ignored’ was declared here 3165 | size_t ignored; | ^~~~~~~ In file included from Rwrapper.cpp:73: crit.h: In function ‘double eval_guided_crit(std::size_t*, std::size_t, std::size_t, int*, int, int*, std::size_t*, std::size_t*, double*, int&, signed char*, signed char*, GainCriterion, double, bool, MissingAction, CategSplit) [with ldouble_safe = double]’: isotree.h:222:45: warning: ‘best_combin’ may be used uninitialized [-Wmaybe-uninitialized] 222 | #define extract_bit(number, bit) (((number) >> (bit)) & 1) | ~~~~~~~~~~^~~~~~~~~ crit.h:3820:73: note: in expansion of macro ‘extract_bit’ 3820 | split_categ[buffer_pos[st_pos + pos]] = extract_bit(best_combin, pos); | ^~~~~~~~~~~ crit.h:3780:32: note: ‘best_combin’ was declared here 3780 | size_t best_combin; | ^~~~~~~~~~~ crit.h: In function ‘double eval_guided_crit_weighted(std::size_t*, std::size_t, std::size_t, int*, int, int*, std::size_t*, double*, int&, signed char*, signed char*, GainCriterion, double, bool, MissingAction, CategSplit, mapping&) [with mapping = std::vector; ldouble_safe = double]’: isotree.h:222:45: warning: ‘best_combin’ may be used uninitialized [-Wmaybe-uninitialized] 222 | #define extract_bit(number, bit) (((number) >> (bit)) & 1) | ~~~~~~~~~~^~~~~~~~~ crit.h:4168:73: note: in expansion of macro ‘extract_bit’ 4168 | split_categ[buffer_pos[st_pos + pos]] = extract_bit(best_combin, pos); | ^~~~~~~~~~~ crit.h:4124:32: note: ‘best_combin’ was declared here 4124 | size_t best_combin; | ^~~~~~~~~~~ crit.h: In function ‘double eval_guided_crit_weighted(std::size_t*, std::size_t, std::size_t, int*, int, int*, std::size_t*, double*, int&, signed char*, signed char*, GainCriterion, double, bool, MissingAction, CategSplit, mapping&) [with mapping = tsl::robin_map; ldouble_safe = double]’: isotree.h:222:45: warning: ‘best_combin’ may be used uninitialized [-Wmaybe-uninitialized] 222 | #define extract_bit(number, bit) (((number) >> (bit)) & 1) | ~~~~~~~~~~^~~~~~~~~ crit.h:4168:73: note: in expansion of macro ‘extract_bit’ 4168 | split_categ[buffer_pos[st_pos + pos]] = extract_bit(best_combin, pos); | ^~~~~~~~~~~ crit.h:4124:32: note: ‘best_combin’ was declared here 4124 | size_t best_combin; | ^~~~~~~~~~~ crit.h: In function ‘double eval_guided_crit(std::size_t*, std::size_t, std::size_t, int*, int, int*, std::size_t*, std::size_t*, double*, int&, signed char*, signed char*, GainCriterion, double, bool, MissingAction, CategSplit) [with ldouble_safe = long double]’: isotree.h:222:45: warning: ‘best_combin’ may be used uninitialized [-Wmaybe-uninitialized] 222 | #define extract_bit(number, bit) (((number) >> (bit)) & 1) | ~~~~~~~~~~^~~~~~~~~ crit.h:3820:73: note: in expansion of macro ‘extract_bit’ 3820 | split_categ[buffer_pos[st_pos + pos]] = extract_bit(best_combin, pos); | ^~~~~~~~~~~ crit.h:3780:32: note: ‘best_combin’ was declared here 3780 | size_t best_combin; | ^~~~~~~~~~~ crit.h: In function ‘double eval_guided_crit_weighted(std::size_t*, std::size_t, std::size_t, int*, int, int*, std::size_t*, double*, int&, signed char*, signed char*, GainCriterion, double, bool, MissingAction, CategSplit, mapping&) [with mapping = std::vector; ldouble_safe = long double]’: isotree.h:222:45: warning: ‘best_combin’ may be used uninitialized [-Wmaybe-uninitialized] 222 | #define extract_bit(number, bit) (((number) >> (bit)) & 1) | ~~~~~~~~~~^~~~~~~~~ crit.h:4168:73: note: in expansion of macro ‘extract_bit’ 4168 | split_categ[buffer_pos[st_pos + pos]] = extract_bit(best_combin, pos); | ^~~~~~~~~~~ crit.h:4124:32: note: ‘best_combin’ was declared here 4124 | size_t best_combin; | ^~~~~~~~~~~ crit.h: In function ‘double eval_guided_crit_weighted(std::size_t*, std::size_t, std::size_t, int*, int, int*, std::size_t*, double*, int&, signed char*, signed char*, GainCriterion, double, bool, MissingAction, CategSplit, mapping&) [with mapping = tsl::robin_map; ldouble_safe = long double]’: isotree.h:222:45: warning: ‘best_combin’ may be used uninitialized [-Wmaybe-uninitialized] 222 | #define extract_bit(number, bit) (((number) >> (bit)) & 1) | ~~~~~~~~~~^~~~~~~~~ crit.h:4168:73: note: in expansion of macro ‘extract_bit’ 4168 | split_categ[buffer_pos[st_pos + pos]] = extract_bit(best_combin, pos); | ^~~~~~~~~~~ crit.h:4124:32: note: ‘best_combin’ was declared here 4124 | size_t best_combin; | ^~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c formatted_exporters.cpp -o formatted_exporters.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c indexer.cpp -o indexer.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c merge_models.cpp -o merge_models.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c serialize.cpp -o serialize.o In function ‘void write_bytes(const void*, std::size_t, FILE*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’ at serialize.cpp:3934:26: serialize.cpp:470:5: warning: ‘size_model1’ may be used uninitialized [-Wmaybe-uninitialized] 470 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’: serialize.cpp:3840:12: note: ‘size_model1’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, FILE*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’ at serialize.cpp:3936:26: serialize.cpp:470:5: warning: ‘size_model2’ may be used uninitialized [-Wmaybe-uninitialized] 470 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’: serialize.cpp:3840:25: note: ‘size_model2’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, FILE*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’ at serialize.cpp:3938:26: serialize.cpp:470:5: warning: ‘size_model3’ may be used uninitialized [-Wmaybe-uninitialized] 470 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’: serialize.cpp:3840:38: note: ‘size_model3’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, FILE*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’ at serialize.cpp:3940:26: serialize.cpp:470:5: warning: ‘size_model4’ may be used uninitialized [-Wmaybe-uninitialized] 470 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = _IO_FILE*]’: serialize.cpp:3840:51: note: ‘size_model4’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, std::ostream&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’ at serialize.cpp:3934:26: serialize.cpp:462:5: warning: ‘size_model1’ may be used uninitialized [-Wmaybe-uninitialized] 462 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’: serialize.cpp:3840:12: note: ‘size_model1’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, std::ostream&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’ at serialize.cpp:3936:26: serialize.cpp:462:5: warning: ‘size_model2’ may be used uninitialized [-Wmaybe-uninitialized] 462 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’: serialize.cpp:3840:25: note: ‘size_model2’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, std::ostream&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’ at serialize.cpp:3938:26: serialize.cpp:462:5: warning: ‘size_model3’ may be used uninitialized [-Wmaybe-uninitialized] 462 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’: serialize.cpp:3840:38: note: ‘size_model3’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, std::ostream&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’ at serialize.cpp:3940:26: serialize.cpp:462:5: warning: ‘size_model4’ may be used uninitialized [-Wmaybe-uninitialized] 462 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = std::basic_ostream]’: serialize.cpp:3840:51: note: ‘size_model4’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, char*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’ at serialize.cpp:3934:26: serialize.cpp:454:5: warning: ‘size_model1’ may be used uninitialized [-Wmaybe-uninitialized] 454 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’: serialize.cpp:3840:12: note: ‘size_model1’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, char*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’ at serialize.cpp:3936:26: serialize.cpp:454:5: warning: ‘size_model2’ may be used uninitialized [-Wmaybe-uninitialized] 454 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’: serialize.cpp:3840:25: note: ‘size_model2’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, char*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’ at serialize.cpp:3938:26: serialize.cpp:454:5: warning: ‘size_model3’ may be used uninitialized [-Wmaybe-uninitialized] 454 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’: serialize.cpp:3840:38: note: ‘size_model3’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ In function ‘void write_bytes(const void*, std::size_t, char*&) [with dtype = char]’, inlined from ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’ at serialize.cpp:3940:26: serialize.cpp:454:5: warning: ‘size_model4’ may be used uninitialized [-Wmaybe-uninitialized] 454 | if (n_els == 0) return; | ^~ serialize.cpp: In function ‘void serialize_combined(const char*, const char*, const char*, const char*, const char*, std::size_t, otype&) [with otype = char*]’: serialize.cpp:3840:51: note: ‘size_model4’ was declared here 3840 | size_t size_model1, size_model2, size_model3, size_model4; | ^~~~~~~~~~~ g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c sql.cpp -o sql.o g++-15 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -DRCPP_USE_UNWIND_PROTECT -D_FOR_R -D_USE_XOSHIRO -D_USE_ROBIN_MAP -DSUPPORTS_RESTRICT=1 -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fno-math-errno -fno-trapping-math -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -c subset_models.cpp -o subset_models.o g++-15 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o isotree.so RcppExports.o Rwrapper.o formatted_exporters.o indexer.o merge_models.o serialize.o sql.o subset_models.o -fopenmp -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpwtcF3x/R.INSTALL58b7a3df65cea/isotree/src' installing to /home/hornik/tmp/CRAN_recheck/Library/00LOCK-isotree/00new/isotree/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (isotree) checking BART_2.9.10.tar.gz ... checking AuxSurvey_1.1.tar.gz ... checking bartMan_0.2.1.tar.gz ... checking bartXViz_1.0.9.tar.gz ... checking bmabart_2.0.tar.gz ... checking borrowr_0.2.0.tar.gz ... checking CIMTx_1.2.0.tar.gz ... checking cjbart_0.3.2.tar.gz ... checking paths_0.1.2.tar.gz ... checking RCTrep_1.2.0.tar.gz ... checking riAFTBART_0.3.3.tar.gz ... checking SAMTx_0.3.0.tar.gz ... checking tidytreatment_0.3.2.tar.gz ... checking varPro_2.0.0.tar.gz ... checking bark_1.0.5.tar.gz ... checking condvis2_0.1.2.tar.gz ... checking CRE_0.2.7.tar.gz ... checking familiar_1.5.0.tar.gz ... checking MachineShop_3.9.1.tar.gz ... checking StratifiedMedicine_1.0.5.tar.gz ... Depends: Package: BART Depends: R (>= 3.6), nlme, survival Imports: Rcpp (>= 0.12.3), parallel, tools LinkingTo: Rcpp Timings: user system elapsed BART 143.47 12.907 154.613 Results: Check status summary: NOTE OK Source packages 0 1 Reverse depends 1 18 Check results summary: BART ... OK rdepends_AuxSurvey ... OK rdepends_bark ... OK rdepends_bartMan ... OK rdepends_bartXViz ... OK rdepends_bmabart ... OK rdepends_borrowr ... OK rdepends_CIMTx ... OK rdepends_cjbart ... OK rdepends_condvis2 ... OK rdepends_CRE ... OK rdepends_familiar ... OK rdepends_MachineShop ... NOTE * checking Rd cross-references ... NOTE rdepends_paths ... OK rdepends_RCTrep ... OK rdepends_riAFTBART ... OK rdepends_SAMTx ... OK rdepends_StratifiedMedicine ... OK rdepends_tidytreatment ... OK rdepends_varPro ... OK Check results changes: Package: borrowr Check: CRAN incoming feasibility Old result: NOTE Package: SAMTx Check: CRAN incoming feasibility Old result: NOTE Package: StratifiedMedicine Check: CRAN incoming feasibility Old result: NOTE