* using log directory ‘/srv/hornik/tmp/CRAN_pretest/AutoWMM.Rcheck’
* using R Under development (unstable) (2024-09-11 r87117)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 18.1.8 (9)
    Debian flang-new version 18.1.8 (9)
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘AutoWMM/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AutoWMM’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/3s] NOTE
Maintainer: ‘The package maintainer <mallory.flynn@stat.ubc.ca>’

New submission

Found the following (possibly) invalid URLs:
  URL: https://github.com/malfly/AutoWMM
    From: DESCRIPTION
    Status: 404
    Message: Not Found

DESCRIPTION fields with placeholder content:
  Maintainer: The package maintainer <mallory.flynn@stat.ubc.ca>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AutoWMM’ can be installed ... [2s/2s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Maintainer field differs from that derived from Authors@R
  Maintainer: ‘The package maintainer <mallory.flynn@stat.ubc.ca>’
  Authors@R:  ‘Mallory J Flynn <mallory.flynn@stat.ubc.ca>’

* checking top-level files ... NOTE
Non-standard file/directory found at top level:
  ‘cran-comments.md’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [4s/4s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [15s/15s] ERROR
Running examples in ‘AutoWMM-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: countTree
> ### Title: countTree
> ### Aliases: countTree
> 
> ### ** Examples
> 
> ## example admissible dataset
> data(treeData1)
> tree <- makeTree(treeData1)
> Zhats <- wmmTree(tree, sample_length = 10)
[1] "using variance-weighted mean with multiplier method sampled path estimates"
> countTree(tree)
Error in plot.Node(tree) : 
  Package "DiagrammeR" is required to plot a `data.tree::Node`object. Please install it.
Calls: countTree -> plot -> plot.Node
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [1s/1s] ERROR
  Running ‘testthat.R’ [1s/1s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > # This file is part of the standard setup for testthat.
  > # It is recommended that you do not modify it.
  > #
  > # Where should you do additional test configuration?
  > # Learn more about the roles of various files in:
  > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
  > # * https://testthat.r-lib.org/articles/special-files.html
  > 
  > library(testthat)
  > library(AutoWMM)
  > 
  > test_check("AutoWMM")
  [1] "using variance-weighted mean with multiplier method sampled path estimates"
  [1] "using variance-weighted mean with multiplier method sampled path estimates"
  [1] "using variance-weighted mean with multiplier method sampled path estimates"
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 11 ]
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Error ('test-check_functions.R:106:3'): countTree function returns correct type ──
  Error in `plot.Node(tree)`: Package "DiagrammeR" is required to plot a `data.tree::Node`object. Please install it.
  Backtrace:
      ▆
   1. ├─testthat::expect_type(countTree(tree), "list") at test-check_functions.R:106:3
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─AutoWMM::countTree(tree)
   5.   ├─base::plot(tree)
   6.   └─data.tree:::plot.Node(tree)
  ── Error ('test-check_functions.R:112:3'): drawTree function returns correct type ──
  Error in `plot.Node(tree)`: Package "DiagrammeR" is required to plot a `data.tree::Node`object. Please install it.
  Backtrace:
      ▆
   1. ├─testthat::expect_type(drawTree(tree), "list") at test-check_functions.R:112:3
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─AutoWMM::drawTree(tree)
   5.   ├─base::plot(tree)
   6.   └─data.tree:::plot.Node(tree)
  ── Error ('test-check_functions.R:119:3'): estTree function returns correct type ──
  Error in `plot.Node(tree)`: Package "DiagrammeR" is required to plot a `data.tree::Node`object. Please install it.
  Backtrace:
      ▆
   1. ├─testthat::expect_type(estTree(tree), "list") at test-check_functions.R:119:3
   2. │ └─testthat::quasi_label(enquo(object), arg = "object")
   3. │   └─rlang::eval_bare(expr, quo_get_env(quo))
   4. └─AutoWMM::estTree(tree)
   5.   ├─base::plot(tree)
   6.   └─data.tree:::plot.Node(tree)
  
  [ FAIL 3 | WARN 0 | SKIP 0 | PASS 11 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [1s/1s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘AutoWMM.Rmd’ using rmarkdown

Quitting from lines 77-79 [unnamed-chunk-3] (AutoWMM.Rmd)
Error: processing vignette 'AutoWMM.Rmd' failed with diagnostics:
Package "DiagrammeR" is required to plot a `data.tree::Node`object. Please install it.
--- failed re-building ‘AutoWMM.Rmd’

SUMMARY: processing the following file failed:
  ‘AutoWMM.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [3s/3s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 3 ERRORs, 3 NOTEs