* installing *source* package ‘AutoAds’ ... ** using staged installation ** R ** byte-compile and prepare package for lazy loading Installing package into ‘/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531’ (as ‘lib’ is unspecified) trying URL ‘https://cran.rstudio.com/src/contrib/tidyverse_2.0.0.tar.gz’ Content type 'application/x-gzip' length 704618 bytes (688 KB) ================================================== downloaded 688 KB * installing *source* package ‘tidyverse’ ... ** package ‘tidyverse’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (tidyverse) The downloaded source packages are in ‘/tmp/Rtmpe3RjEC/working_dir/RtmpANB1Dv/downloaded_packages’ Installing package into ‘/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531’ (as ‘lib’ is unspecified) trying URL ‘https://cran.rstudio.com/src/contrib/forecast_8.21.tar.gz’ Content type 'application/x-gzip' length 793718 bytes (775 KB) ================================================== downloaded 775 KB * installing *source* package ‘forecast’ ... ** package ‘forecast’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ using C++ compiler: ‘Debian clang version 16.0.6 (3)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c calcBATS.cpp -o calcBATS.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c calcTBATS.cpp -o calcTBATS.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c etsTargetFunction.cpp -o etsTargetFunction.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c etsTargetFunctionWrapper.cpp -o etsTargetFunctionWrapper.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c etscalc.c -o etscalc.o etscalc.c:119:15: warning: variable 'nstates' set but not used [-Wunused-but-set-variable] int i, j, nstates; ^ 1 warning generated. clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c etspolyroot.c -o etspolyroot.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c makeBATSMatrices.cpp -o makeBATSMatrices.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c makeTBATSMatrices.cpp -o makeTBATSMatrices.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c registerDynamicSymbol.c -o registerDynamicSymbol.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c updateMatrices.cpp -o updateMatrices.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O3 -Wall -pedantic -c updateTBATSMatrices.cpp -o updateTBATSMatrices.o updateTBATSMatrices.cpp:37:10: warning: unused variable 'gammaVector' [-Wunused-variable] double *gammaVector; ^ 1 warning generated. clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o forecast.so calcBATS.o calcTBATS.o etsTargetFunction.o etsTargetFunctionWrapper.o etscalc.o etspolyroot.o makeBATSMatrices.o makeTBATSMatrices.o registerDynamicSymbol.o updateMatrices.o updateTBATSMatrices.o -fopenmp -llapack -L/home/hornik/tmp/R-d-clang-16/lib -lRblas -L/usr/lib/gcc/x86_64-linux-gnu/12 -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-forecast/00new/forecast/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (forecast) The downloaded source packages are in ‘/tmp/Rtmpe3RjEC/working_dir/RtmpANB1Dv/downloaded_packages’ Installing package into ‘/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531’ (as ‘lib’ is unspecified) trying URL ‘https://cran.rstudio.com/src/contrib/lattice_0.21-8.tar.gz’ Content type 'application/x-gzip' length 589330 bytes (575 KB) ================================================== downloaded 575 KB * installing *source* package ‘lattice’ ... ** package ‘lattice’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c threeDplot.c -o threeDplot.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o lattice.so init.o threeDplot.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-lattice/00new/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (lattice) The downloaded source packages are in ‘/tmp/Rtmpe3RjEC/working_dir/RtmpANB1Dv/downloaded_packages’ Installing package into ‘/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531’ (as ‘lib’ is unspecified) also installing the dependencies ‘credentials’, ‘zip’, ‘gitcreds’, ‘httr2’, ‘ini’, ‘httpuv’, ‘xtable’, ‘sourcetools’, ‘later’, ‘promises’, ‘diffobj’, ‘gert’, ‘gh’, ‘rprojroot’, ‘whisker’, ‘shiny’, ‘downlit’, ‘htmlwidgets’, ‘xopen’, ‘brew’, ‘commonmark’, ‘brio’, ‘praise’, ‘waldo’, ‘usethis’, ‘desc’, ‘miniUI’, ‘pkgbuild’, ‘pkgdown’, ‘pkgload’, ‘profvis’, ‘rcmdcheck’, ‘remotes’, ‘roxygen2’, ‘rversions’, ‘sessioninfo’, ‘testthat’, ‘urlchecker’ trying URL ‘http://cran.us.r-project.org/src/contrib/credentials_1.3.2.tar.gz’ Content type 'application/x-gzip' length 230070 bytes (224 KB) ================================================== downloaded 224 KB trying URL ‘http://cran.us.r-project.org/src/contrib/zip_2.3.0.tar.gz’ Content type 'application/x-gzip' length 110488 bytes (107 KB) ================================================== downloaded 107 KB trying URL ‘http://cran.us.r-project.org/src/contrib/gitcreds_0.1.2.tar.gz’ Content type 'application/x-gzip' length 62569 bytes (61 KB) ================================================== downloaded 61 KB trying URL ‘http://cran.us.r-project.org/src/contrib/httr2_0.2.3.tar.gz’ Content type 'application/x-gzip' length 123376 bytes (120 KB) ================================================== downloaded 120 KB trying URL ‘http://cran.us.r-project.org/src/contrib/ini_0.3.1.tar.gz’ Content type 'application/x-gzip' length 3488 bytes ================================================== downloaded 3488 bytes trying URL ‘http://cran.us.r-project.org/src/contrib/httpuv_1.6.11.tar.gz’ Content type 'application/x-gzip' length 1874829 bytes (1.8 MB) ================================================== downloaded 1.8 MB trying URL ‘http://cran.us.r-project.org/src/contrib/xtable_1.8-4.tar.gz’ Content type 'application/x-gzip' length 564589 bytes (551 KB) ================================================== downloaded 551 KB trying URL ‘http://cran.us.r-project.org/src/contrib/sourcetools_0.1.7-1.tar.gz’ Content type 'application/x-gzip' length 24095 bytes (23 KB) ================================================== downloaded 23 KB trying URL ‘http://cran.us.r-project.org/src/contrib/later_1.3.1.tar.gz’ Content type 'application/x-gzip' length 63641 bytes (62 KB) ================================================== downloaded 62 KB trying URL ‘http://cran.us.r-project.org/src/contrib/promises_1.2.0.1.tar.gz’ Content type 'application/x-gzip' length 3120504 bytes (3.0 MB) ================================================== downloaded 3.0 MB trying URL ‘http://cran.us.r-project.org/src/contrib/diffobj_0.3.5.tar.gz’ Content type 'application/x-gzip' length 479276 bytes (468 KB) ================================================== downloaded 468 KB trying URL ‘http://cran.us.r-project.org/src/contrib/gert_1.9.2.tar.gz’ Content type 'application/x-gzip' length 121088 bytes (118 KB) ================================================== downloaded 118 KB trying URL ‘http://cran.us.r-project.org/src/contrib/gh_1.4.0.tar.gz’ Content type 'application/x-gzip' length 41214 bytes (40 KB) ================================================== downloaded 40 KB trying URL ‘http://cran.us.r-project.org/src/contrib/rprojroot_2.0.3.tar.gz’ Content type 'application/x-gzip' length 59939 bytes (58 KB) ================================================== downloaded 58 KB trying URL ‘http://cran.us.r-project.org/src/contrib/whisker_0.4.1.tar.gz’ Content type 'application/x-gzip' length 28586 bytes (27 KB) ================================================== downloaded 27 KB trying URL ‘http://cran.us.r-project.org/src/contrib/shiny_1.7.4.tar.gz’ Content type 'application/x-gzip' length 2476288 bytes (2.4 MB) ================================================== downloaded 2.4 MB trying URL ‘http://cran.us.r-project.org/src/contrib/downlit_0.4.3.tar.gz’ Content type 'application/x-gzip' length 36888 bytes (36 KB) ================================================== downloaded 36 KB trying URL ‘http://cran.us.r-project.org/src/contrib/htmlwidgets_1.6.2.tar.gz’ Content type 'application/x-gzip' length 867472 bytes (847 KB) ================================================== downloaded 847 KB trying URL ‘http://cran.us.r-project.org/src/contrib/xopen_1.0.0.tar.gz’ Content type 'application/x-gzip' length 11221 bytes (10 KB) ================================================== downloaded 10 KB trying URL ‘http://cran.us.r-project.org/src/contrib/brew_1.0-8.tar.gz’ Content type 'application/x-gzip' length 73562 bytes (71 KB) ================================================== downloaded 71 KB trying URL ‘http://cran.us.r-project.org/src/contrib/commonmark_1.9.0.tar.gz’ Content type 'application/x-gzip' length 144922 bytes (141 KB) ================================================== downloaded 141 KB trying URL ‘http://cran.us.r-project.org/src/contrib/brio_1.1.3.tar.gz’ Content type 'application/x-gzip' length 12629 bytes (12 KB) ================================================== downloaded 12 KB trying URL ‘http://cran.us.r-project.org/src/contrib/praise_1.0.0.tar.gz’ Content type 'application/x-gzip' length 6100 bytes ================================================== downloaded 6100 bytes trying URL ‘http://cran.us.r-project.org/src/contrib/waldo_0.5.1.tar.gz’ Content type 'application/x-gzip' length 39619 bytes (38 KB) ================================================== downloaded 38 KB trying URL ‘http://cran.us.r-project.org/src/contrib/usethis_2.2.1.tar.gz’ Content type 'application/x-gzip' length 370992 bytes (362 KB) ================================================== downloaded 362 KB trying URL ‘http://cran.us.r-project.org/src/contrib/desc_1.4.2.tar.gz’ Content type 'application/x-gzip' length 79249 bytes (77 KB) ================================================== downloaded 77 KB trying URL ‘http://cran.us.r-project.org/src/contrib/miniUI_0.1.1.1.tar.gz’ Content type 'application/x-gzip' length 97958 bytes (95 KB) ================================================== downloaded 95 KB trying URL ‘http://cran.us.r-project.org/src/contrib/pkgbuild_1.4.2.tar.gz’ Content type 'application/x-gzip' length 46953 bytes (45 KB) ================================================== downloaded 45 KB trying URL ‘http://cran.us.r-project.org/src/contrib/pkgdown_2.0.7.tar.gz’ Content type 'application/x-gzip' length 871465 bytes (851 KB) ================================================== downloaded 851 KB trying URL ‘http://cran.us.r-project.org/src/contrib/pkgload_1.3.2.tar.gz’ Content type 'application/x-gzip' length 76704 bytes (74 KB) ================================================== downloaded 74 KB trying URL ‘http://cran.us.r-project.org/src/contrib/profvis_0.3.8.tar.gz’ Content type 'application/x-gzip' length 149012 bytes (145 KB) ================================================== downloaded 145 KB trying URL ‘http://cran.us.r-project.org/src/contrib/rcmdcheck_1.4.0.tar.gz’ Content type 'application/x-gzip' length 73522 bytes (71 KB) ================================================== downloaded 71 KB trying URL ‘http://cran.us.r-project.org/src/contrib/remotes_2.4.2.tar.gz’ Content type 'application/x-gzip' length 152540 bytes (148 KB) ================================================== downloaded 148 KB trying URL ‘http://cran.us.r-project.org/src/contrib/roxygen2_7.2.3.tar.gz’ Content type 'application/x-gzip' length 279442 bytes (272 KB) ================================================== downloaded 272 KB trying URL ‘http://cran.us.r-project.org/src/contrib/rversions_2.1.2.tar.gz’ Content type 'application/x-gzip' length 42135 bytes (41 KB) ================================================== downloaded 41 KB trying URL ‘http://cran.us.r-project.org/src/contrib/sessioninfo_1.2.2.tar.gz’ Content type 'application/x-gzip' length 170924 bytes (166 KB) ================================================== downloaded 166 KB trying URL ‘http://cran.us.r-project.org/src/contrib/testthat_3.1.9.tar.gz’ Content type 'application/x-gzip' length 736491 bytes (719 KB) ================================================== downloaded 719 KB trying URL ‘http://cran.us.r-project.org/src/contrib/urlchecker_1.0.1.tar.gz’ Content type 'application/x-gzip' length 13340 bytes (13 KB) ================================================== downloaded 13 KB trying URL ‘http://cran.us.r-project.org/src/contrib/devtools_2.4.5.tar.gz’ Content type 'application/x-gzip' length 374718 bytes (365 KB) ================================================== downloaded 365 KB * installing *source* package ‘credentials’ ... ** package ‘credentials’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (credentials) * installing *source* package ‘zip’ ... ** package ‘zip’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ clang-16 -g -O3 -Wall -pedantic miniz.c zip.c unixutils.c tools/cmdzip.c -o tools/cmdzip clang-16 -g -O3 -Wall -pedantic miniz.c zip.c unixutils.c tools/cmdunzip.c -o tools/cmdunzip clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c miniz.c -o miniz.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rzip.c -o rzip.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c zip.c -o zip.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c unixutils.c -o unixutils.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o zip.so init.o miniz.o rzip.o zip.o unixutils.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing via 'install.libs.R' to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-zip/00new/zip ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (zip) * installing *source* package ‘gitcreds’ ... ** package ‘gitcreds’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gitcreds) * installing *source* package ‘httr2’ ... ** package ‘httr2’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httr2) * installing *source* package ‘ini’ ... ** package ‘ini’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (ini) * installing *source* package ‘xtable’ ... ** package ‘xtable’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xtable) * installing *source* package ‘sourcetools’ ... ** package ‘sourcetools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ using C++ compiler: ‘Debian clang version 16.0.6 (3)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Reader.cpp -o Reader.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c Tokenizer.cpp -o Tokenizer.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c sourcetools-init.c -o sourcetools-init.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o sourcetools.so Reader.o Tokenizer.o sourcetools-init.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-sourcetools/00new/sourcetools/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sourcetools) * installing *source* package ‘later’ ... ** package ‘later’ successfully unpacked and MD5 sums checked ** using staged installation Running configure script -latomic linker flag not needed. ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ using C++ compiler: ‘Debian clang version 16.0.6 (3)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c callback_registry.cpp -o callback_registry.o In file included from callback_registry.cpp:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c debug.cpp -o debug.o debug.cpp:31:11: warning: variable 'res' set but not used [-Wunused-but-set-variable] ssize_t res = write(STDERR_FILENO, buf, n); ^ 1 warning generated. clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later.cpp -o later.o In file included from later.cpp:1: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_posix.cpp -o later_posix.o In file included from later_posix.cpp:9: In file included from ./later.h:6: In file included from ./callback_registry.h:10: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ later_posix.cpp:247:13: warning: unused variable 'ret' [-Wunused-variable] ssize_t ret = write(dummy_pipe_in, "a", 1); ^ 2 warnings generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c later_win32.cpp -o later_win32.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timer_posix.cpp -o timer_posix.o In file included from timer_posix.cpp:6: In file included from ./timer_posix.h:8: In file included from ./threadutils.h:8: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_unix.cpp -o timestamp_unix.o In file included from timestamp_unix.cpp:5: In file included from ./timeconv.h:9: In file included from ./tinycthread.h:32: ./badthreads.h:48:9: warning: keyword is hidden by macro definition [-Wkeyword-macro] #define thread_local THREADS_H_ERROR ^ 1 warning generated. clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c timestamp_win32.cpp -o timestamp_win32.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -pthread -DSTRICT_R_HEADERS -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c tinycthread.c -o tinycthread.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o later.so RcppExports.o callback_registry.o debug.o init.o later.o later_posix.o later_win32.o timer_posix.o timestamp_unix.o timestamp_win32.o tinycthread.o -pthread -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-later/00new/later/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (later) * installing *source* package ‘diffobj’ ... ** package ‘diffobj’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diff.c -o diff.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c diffobj.c -o diffobj.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o diffobj.so diff.o diffobj.o init.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-diffobj/00new/diffobj/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (diffobj) * installing *source* package ‘rprojroot’ ... ** package ‘rprojroot’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rprojroot) * installing *source* package ‘whisker’ ... ** package ‘whisker’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (whisker) * installing *source* package ‘htmlwidgets’ ... ** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (htmlwidgets) * installing *source* package ‘xopen’ ... ** package ‘xopen’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (xopen) * installing *source* package ‘brew’ ... ** package ‘brew’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brew) * installing *source* package ‘commonmark’ ... ** package ‘commonmark’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ rm -f cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o extensions.o init.o wrapper.o commonmark.so cmark/libstatcmark.a clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions.c -o extensions.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c wrapper.c -o wrapper.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark.c -o cmark/cmark.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/node.c -o cmark/node.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/iterator.c -o cmark/iterator.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/blocks.c -o cmark/blocks.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/inlines.c -o cmark/inlines.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/scanners.c -o cmark/scanners.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/utf8.c -o cmark/utf8.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/buffer.c -o cmark/buffer.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/references.c -o cmark/references.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/render.c -o cmark/render.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/man.c -o cmark/man.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/xml.c -o cmark/xml.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/html.c -o cmark/html.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/commonmark.c -o cmark/commonmark.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/latex.c -o cmark/latex.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_href_e.c -o cmark/houdini_href_e.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_e.c -o cmark/houdini_html_e.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/houdini_html_u.c -o cmark/houdini_html_u.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/cmark_ctype.c -o cmark/cmark_ctype.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/arena.c -o cmark/arena.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/linked_list.c -o cmark/linked_list.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plugin.c -o cmark/plugin.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/registry.c -o cmark/registry.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/syntax_extension.c -o cmark/syntax_extension.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/plaintext.c -o cmark/plaintext.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/footnotes.c -o cmark/footnotes.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c cmark/map.c -o cmark/map.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/autolink.c -o extensions/autolink.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/core-extensions.c -o extensions/core-extensions.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/ext_scanners.c -o extensions/ext_scanners.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/strikethrough.c -o extensions/strikethrough.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/table.c -o extensions/table.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tagfilter.c -o extensions/tagfilter.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Icmark -I. -DCMARK_GFM_STATIC_DEFINE -DCMARK_GFM_EXTENSIONS_STATIC_DEFINE -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c extensions/tasklist.c -o extensions/tasklist.o ar rcs cmark/libstatcmark.a cmark/cmark.o cmark/node.o cmark/iterator.o cmark/blocks.o cmark/inlines.o cmark/scanners.o cmark/utf8.o cmark/buffer.o cmark/references.o cmark/render.o cmark/man.o cmark/xml.o cmark/html.o cmark/commonmark.o cmark/latex.o cmark/houdini_href_e.o cmark/houdini_html_e.o cmark/houdini_html_u.o cmark/cmark_ctype.o cmark/arena.o cmark/linked_list.o cmark/plugin.o cmark/registry.o cmark/syntax_extension.o cmark/plaintext.o cmark/footnotes.o cmark/map.o extensions/autolink.o extensions/core-extensions.o extensions/ext_scanners.o extensions/strikethrough.o extensions/table.o extensions/tagfilter.o extensions/tasklist.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o commonmark.so extensions.o init.o wrapper.o -Lcmark -lstatcmark -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-commonmark/00new/commonmark/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (commonmark) * installing *source* package ‘brio’ ... ** package ‘brio’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c brio.c -o brio.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c file_line_endings.c -o file_line_endings.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file.c -o read_file.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_file_raw.c -o read_file_raw.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c read_lines.c -o read_lines.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file.c -o write_file.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_file_raw.c -o write_file_raw.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c write_lines.c -o write_lines.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o brio.so brio.o file_line_endings.o init.o read_file.o read_file_raw.o read_lines.o write_file.o write_file_raw.o write_lines.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-brio/00new/brio/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (brio) * installing *source* package ‘praise’ ... ** package ‘praise’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (praise) * installing *source* package ‘remotes’ ... ** package ‘remotes’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_package_version, : invalid non-character version specification 'x' (type: list) Calls: 1: tools:::makeLazyLoading("remotes", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-remotes/00new", keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/remotes") 2: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 3: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 4: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 5: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE) 6: try(sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data)) 7: tryCatch [... truncated] ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (remotes) * installing *source* package ‘rversions’ ... ** package ‘rversions’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rversions) * installing *source* package ‘sessioninfo’ ... ** package ‘sessioninfo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (sessioninfo) * installing *source* package ‘urlchecker’ ... ** package ‘urlchecker’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (urlchecker) * installing *source* package ‘promises’ ... ** package ‘promises’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (3)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c promise_task.cpp -o promise_task.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o promises.so RcppExports.o promise_task.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-promises/00new/promises/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (promises) * installing *source* package ‘gert’ ... ** package ‘gert’ successfully unpacked and MD5 sums checked ** using staged installation Found pkg-config cflags and libs! Using PKG_CFLAGS= Using PKG_LIBS=-lgit2 Configuration OK! ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ rm -f gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c branch.c -o branch.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c clone.c -o clone.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c commit.c -o commit.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c config.c -o config.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c conflicts.c -o conflicts.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c files.c -o files.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c merge.c -o merge.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c rebase.c -o rebase.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c stash.c -o stash.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c submodules.c -o submodules.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c tag.c -o tag.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c utils.c -o utils.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -DR_NO_REMAP -DSTRICT_R_HEADERS -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -fpic -g -O3 -Wall -pedantic -c version.c -o version.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o gert.so branch.o clone.o commit.o config.o conflicts.o files.o init.o merge.o rebase.o stash.o submodules.o tag.o utils.o version.o -lgit2 -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-gert/00new/gert/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gert) * installing *source* package ‘gh’ ... ** package ‘gh’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (gh) * installing *source* package ‘waldo’ ... ** package ‘waldo’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (waldo) * installing *source* package ‘desc’ ... ** package ‘desc’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (desc) * installing *source* package ‘profvis’ ... ** package ‘profvis’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c pause.c -o pause.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c profvis-init.c -o profvis-init.o clang-16 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o profvis.so pause.o profvis-init.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-profvis/00new/profvis/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (profvis) * installing *source* package ‘httpuv’ ... ** package ‘httpuv’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ using C++ compiler: ‘Debian clang version 16.0.6 (3)’ clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports-legacy.cpp -o RcppExports-legacy.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c RcppExports.cpp -o RcppExports.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callback.cpp -o callback.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c callbackqueue.cpp -o callbackqueue.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-unix.cpp -o filedatasource-unix.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c filedatasource-win.cpp -o filedatasource-win.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c fs.cpp -o fs.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c gzipdatasource.cpp -o gzipdatasource.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http.cpp -o http.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httprequest.cpp -o httprequest.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpresponse.cpp -o httpresponse.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c httpuv.cpp -o httpuv.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c md5.c -o md5.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c mime.cpp -o mime.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c socket.cpp -o socket.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c staticpath.cpp -o staticpath.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c thread.cpp -o thread.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c timegm.cpp -o timegm.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c utils.cpp -o utils.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c uvutil.cpp -o uvutil.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c webapplication.cpp -o webapplication.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-base.cpp -o websockets-base.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hixie76.cpp -o websockets-hixie76.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-hybi03.cpp -o websockets-hybi03.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets-ietf.cpp -o websockets-ietf.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c websockets.cpp -o websockets.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c winutils.cpp -o winutils.o cp -p -f libuv/m4/lt_obsolete.m4 libuv/m4/lt~obsolete.m4 cd libuv; \ if ! command -v automake >/dev/null 2>&1 ; then \ echo "automake not found. Touching files so configure will not try to run automake."; \ touch aclocal.m4; \ touch -r aclocal.m4 configure Makefile.in; \ else \ echo "automake found. Running autoupdate and autogen.sh."; \ autoupdate; \ sh autogen.sh; \ fi; \ chmod +x configure; \ CC="clang-16 " CFLAGS="-g -O3 -Wall -pedantic -fpic -fvisibility=hidden -DNDEBUG" CPPFLAGS="-I/usr/local/include" AR="ar" RANLIB="ranlib" LDFLAGS="-Wl,-O1" ./configure "--quiet" automake found. Running autoupdate and autogen.sh. + libtoolize --copy libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltversion.m4' + aclocal -I m4 + autoconf configure.ac:46: warning: $as_echo is obsolete; use AS_ECHO(["message"]) instead lib/m4sugar/m4sh.m4:692: _AS_IF_ELSE is expanded from... lib/m4sugar/m4sh.m4:699: AS_IF is expanded from... ./lib/autoconf/general.m4:2249: AC_CACHE_VAL is expanded from... ./lib/autoconf/general.m4:2270: AC_CACHE_CHECK is expanded from... m4/ax_pthread.m4:88: AX_PTHREAD is expanded from... configure.ac:46: the top level + automake --add-missing --copy make --directory=libuv \ HAVE_DTRACE=0 make[1]: Entering directory '/tmp/Rtmpe3RjEC/working_dir/RtmpJcEH8T/R.INSTALL2d0e75e4bef15/httpuv/src/libuv' CC src/libuv_la-fs-poll.lo CC src/libuv_la-idna.lo CC src/libuv_la-inet.lo CC src/libuv_la-random.lo CC src/libuv_la-strscpy.lo CC src/libuv_la-threadpool.lo CC src/libuv_la-timer.lo CC src/libuv_la-uv-data-getter-setters.lo CC src/libuv_la-uv-common.lo CC src/libuv_la-version.lo CC src/unix/libuv_la-async.lo CC src/unix/libuv_la-core.lo CC src/unix/libuv_la-dl.lo CC src/unix/libuv_la-fs.lo CC src/unix/libuv_la-getaddrinfo.lo CC src/unix/libuv_la-getnameinfo.lo CC src/unix/libuv_la-loop-watcher.lo CC src/unix/libuv_la-loop.lo CC src/unix/libuv_la-pipe.lo CC src/unix/libuv_la-poll.lo CC src/unix/libuv_la-process.lo CC src/unix/libuv_la-random-devurandom.lo CC src/unix/libuv_la-signal.lo CC src/unix/libuv_la-stream.lo CC src/unix/libuv_la-tcp.lo CC src/unix/libuv_la-thread.lo src/unix/thread.c:195:24: warning: comparison of integers of different signs: 'rlim_t' (aka 'unsigned long') and 'long' [-Wsign-compare] if (lim.rlim_cur >= PTHREAD_STACK_MIN) ~~~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ src/unix/thread.c:243:20: warning: comparison of integers of different signs: 'size_t' (aka 'unsigned long') and 'long' [-Wsign-compare] if (stack_size < PTHREAD_STACK_MIN) ~~~~~~~~~~ ^ ~~~~~~~~~~~~~~~~~ 2 warnings generated. CC src/unix/libuv_la-tty.lo CC src/unix/libuv_la-udp.lo CC src/unix/libuv_la-linux-core.lo CC src/unix/libuv_la-linux-inotify.lo CC src/unix/libuv_la-linux-syscalls.lo CC src/unix/libuv_la-procfs-exepath.lo CC src/unix/libuv_la-proctitle.lo CC src/unix/libuv_la-random-getrandom.lo CC src/unix/libuv_la-random-sysctl-linux.lo CC src/unix/libuv_la-epoll.lo CCLD libuv.la make[1]: Leaving directory '/tmp/Rtmpe3RjEC/working_dir/RtmpJcEH8T/R.INSTALL2d0e75e4bef15/httpuv/src/libuv' clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c http-parser/http_parser.c -o http-parser/http_parser.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c sha1/sha1.c -o sha1/sha1.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -Ilibuv/include -pthread -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/Rcpp/include' -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/later/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fvisibility=hidden -DSTRICT_R_HEADERS -fpic -g -O3 -Wall -pedantic -c base64/base64.cpp -o base64/base64.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o httpuv.so RcppExports-legacy.o RcppExports.o callback.o callbackqueue.o filedatasource-unix.o filedatasource-win.o fs.o gzipdatasource.o http.o httprequest.o httpresponse.o httpuv.o md5.o mime.o socket.o staticpath.o thread.o timegm.o utils.o uvutil.o webapplication.o websockets-base.o websockets-hixie76.o websockets-hybi03.o websockets-ietf.o websockets.o winutils.o ./libuv/.libs/libuv.a ./http-parser/http_parser.o ./sha1/sha1.o ./base64/base64.o -pthread -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-httpuv/00new/httpuv/libs ** R ** demo ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (httpuv) * installing *source* package ‘downlit’ ... ** package ‘downlit’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (downlit) * installing *source* package ‘usethis’ ... ** package ‘usethis’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (usethis) * installing *source* package ‘pkgbuild’ ... ** package ‘pkgbuild’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgbuild) * installing *source* package ‘pkgload’ ... ** package ‘pkgload’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgload) * installing *source* package ‘shiny’ ... ** package ‘shiny’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (shiny) * installing *source* package ‘pkgdown’ ... ** package ‘pkgdown’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (pkgdown) * installing *source* package ‘rcmdcheck’ ... ** package ‘rcmdcheck’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rcmdcheck) * installing *source* package ‘roxygen2’ ... ** package ‘roxygen2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘Debian clang version 16.0.6 (3)’ using C++11 clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c cpp11.cpp -o cpp11.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c escapeExamples.cpp -o escapeExamples.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c isComplete.cpp -o isComplete.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c leadingSpaces.cpp -o leadingSpaces.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c parser2.cpp -o parser2.o clang++-16 -std=gnu++11 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I'/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/cpp11/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c wrapUsage.cpp -o wrapUsage.o clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o roxygen2.so cpp11.o escapeExamples.o isComplete.o leadingSpaces.o parser2.o wrapUsage.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-roxygen2/00new/roxygen2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (roxygen2) * installing *source* package ‘testthat’ ... ** package ‘testthat’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘Debian clang version 16.0.6 (3)’ using C++ compiler: ‘Debian clang version 16.0.6 (3)’ clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c init.c -o init.o clang-16 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c reassign.c -o reassign.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-catch.cpp -o test-catch.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-example.cpp -o test-example.o clang++-16 -std=gnu++17 -I"/home/hornik/tmp/R-d-clang-16/include" -DNDEBUG -I../inst/include -DCOMPILING_TESTTHAT -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c test-runner.cpp -o test-runner.o clang++-16 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-clang-16/lib -Wl,-O1 -o testthat.so init.o reassign.o test-catch.o test-example.o test-runner.o -L/home/hornik/tmp/R-d-clang-16/lib -lR installing to /tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-testthat/00new/testthat/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (testthat) * installing *source* package ‘miniUI’ ... ** package ‘miniUI’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (miniUI) * installing *source* package ‘devtools’ ... ** package ‘devtools’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::makeLazyLoading("devtools", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-devtools/00new", keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/devtools") 2: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 3: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 4: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 5: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE) 6: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) [... truncated] Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::makeLazyLoading("devtools", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-devtools/00new", keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/devtools") 2: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 3: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 4: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 5: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE) 6: namespaceImportFrom(ns, loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) [... truncated] ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::.test_load_package("devtools", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-devtools/00new") 2: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 3: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Erro [... truncated] Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::.test_load_package("devtools", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531/00LOCK-devtools/00new") 2: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 3: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Erro [... truncated] ** testing if installed package can be loaded from final location Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::.test_load_package("devtools", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531") 2: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 3: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- p [... truncated] Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::.test_load_package("devtools", "/tmp/Rtmpe3RjEC/working_dir/RtmpCyJSgX/RLIBS_2c51832370531") 2: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return = TRUE))) 3: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <- sys.call(-4L) dcall <- deparse(call, nlines = 1L) prefix <- paste("Error in", dcall, ": ") LONG <- 75L sm <- strsplit(conditionMessage(e), "\n")[[1L]] w <- 14L + nchar(dcall, type = "w") + nchar(sm[1L], type = "w") if (is.na(w)) w <- 14L + nchar(dcall, type = "b") + nchar(sm[1L], type = "b") if (w > LONG) prefix <- paste0(prefix, "\n ") } else prefix <- "Error : " msg <- p [... truncated] ** testing if installed package keeps a record of temporary installation path * DONE (devtools) The downloaded source packages are in ‘/tmp/Rtmpe3RjEC/working_dir/RtmpANB1Dv/downloaded_packages’ Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::makeLazyLoading("AutoAds", "/srv/hornik/tmp/CRAN/AutoAds.Rcheck/00LOCK-AutoAds/00new", keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/srv/hornik/tmp/CRAN/AutoAds.Rcheck/AutoAds") 2: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 3: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 4: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 5: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE) 6: try(sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data)) 7: tryCatch(expr, error = function(e) { call <- [... truncated] Warning in .make_numeric_version(x, strict, .standard_regexps()$valid_numeric_version) : invalid non-character version specification 'x' (type: double) Calls: 1: tools:::makeLazyLoading("AutoAds", "/srv/hornik/tmp/CRAN/AutoAds.Rcheck/00LOCK-AutoAds/00new", keep.source = FALSE, keep.parse.data = FALSE, set.install.dir = "/srv/hornik/tmp/CRAN/AutoAds.Rcheck/AutoAds") 2: code2LazyLoadDB(package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, compress = compress, set.install.dir = set.install.dir) 3: suppressPackageStartupMessages(loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE)) 4: withCallingHandlers(expr, packageStartupMessage = function(c) tryInvokeRestart("muffleMessage")) 5: loadNamespace(package = package, lib.loc = lib.loc, keep.source = keep.source, keep.parse.data = keep.parse.data, partial = TRUE) 6: try(sys.source(codeFile, env, keep.source = keep.source, keep.parse.data = keep.parse.data)) 7: tryCatch(expr, error = function(e) { call <- [... truncated] ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (AutoAds)