* using log directory ‘/srv/hornik/tmp/CRAN_pretest/AnomalyScore.Rcheck’ * using R Under development (unstable) (2024-11-13 r87330) * using platform: x86_64-pc-linux-gnu * R was compiled by Debian clang version 19.1.1 (1) Debian flang-new version 19.1.1 (1) * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘AnomalyScore/DESCRIPTION’ ... OK * this is package ‘AnomalyScore’ version ‘0.0.0.9000’ * package encoding: UTF-8 * checking CRAN incoming feasibility ... [2s/2s] NOTE Maintainer: ‘Guillermo Granados-Garcia ’ New submission Version contains large components (0.0.0.9000) Non-FOSS package license (`use_mit_license()`, `use_gpl3_license()` or friends to pick a license) Possibly misspelled words in DESCRIPTION: knn (6:79) The Title field should be in title case. Current version is: ‘Anomaly scoring for multivariate time series’ In title case that is: ‘Anomaly Scoring for Multivariate Time Series’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking serialization versions ... OK * checking whether package ‘AnomalyScore’ can be installed ... [1s/1s] OK * checking package directory ... OK * checking for future file timestamps ... OK * checking DESCRIPTION meta-information ... WARNING Non-standard license specification: `use_mit_license()`, `use_gpl3_license()` or friends to pick a license Standardizable: FALSE * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [3s/3s] NOTE DEcort: no visible global function definition for ‘var’ DEcortNorm: no visible global function definition for ‘var’ DRfitmse: no visible global function definition for ‘var’ DTWcort: no visible global function definition for ‘na.omit’ DTWcort: no visible global function definition for ‘sd’ DTWcort: no visible global function definition for ‘var’ distance_matrix_coherence: no visible binding for global variable ‘na.exclude’ distance_matrix_mahalanobis: no visible binding for global variable ‘sd’ mBTSRGPDC: no visible binding for global variable ‘var’ Undefined global functions or variables: na.exclude na.omit sd var Consider adding importFrom("stats", "na.exclude", "na.omit", "sd", "var") to your NAMESPACE file. * checking Rd files ... [0s/0s] NOTE checkRd: (-1) PMIME.Rd:41: Lost braces; missing escapes or markup? 41 | computes the measure R_{X->Y|Z} for all combinations of X and Y time | ^ checkRd: (-1) mBTS.Rd:12: Lost braces; missing escapes or markup? 12 | \item{responseindex}{the index of the response variable in {1,...,K}} | ^ checkRd: (-1) mBTSCGCI.Rd:12: Lost braces; missing escapes or markup? 12 | \item{responseindex}{the index of the response variable in {1,...,K}} | ^ checkRd: (-1) mBTSRGPDC.Rd:16: Lost braces; missing escapes or markup? 16 | \item{responseindex}{the index of the response variable in {1,...,K}} | ^ checkRd: (-1) mBTS_Af_mat.Rd:12: Lost braces; missing escapes or markup? 12 | \item{responseindex}{the index of the response variable in {1,...,K}} | ^ checkRd: (-1) multilagmatrix.Rd:12: Lost braces; missing escapes or markup? 12 | \item{responseindex}{the index of the response variable in {1,...,K}} | ^ * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... WARNING Missing link(s) in Rd file 'Cort.Rd': ‘-1,1’ See section 'Cross-references' in the 'Writing R Extensions' manual. Found the following Rd file(s) with Rd \link{} targets missing package anchors: Cort.Rd: -1,1 Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages. * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... WARNING Undocumented arguments in Rd file 'distance_matrix_PMIME.Rd' ‘Lmax’ ‘Tl’ ‘nnei’ ‘A’ Undocumented arguments in Rd file 'dxy_bands.Rd' ‘x’ ‘y’ Undocumented arguments in Rd file 'informative_bands.Rd' ‘x’ Undocumented arguments in Rd file 'mBTS.Rd' ‘pmax’ Documented arguments not in \usage in Rd file 'mBTS.Rd': ‘ordersV’ ‘indexV’ Documented arguments not in \usage in Rd file 'mBTSRGPDC.Rd': ‘responseindex’ Undocumented arguments in Rd file 'matrix_PDC.Rd' ‘unit’ Documented arguments not in \usage in Rd file 'matrix_PDC.Rd': ‘Unit’ Functions with \usage entries need to have the appropriate \alias entries, and all their arguments documented. The \usage entries must correspond to syntactically valid R code. See chapter ‘Writing R documentation files’ in the ‘Writing R Extensions’ manual. * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking examples ... [14s/14s] NOTE Examples with CPU (user + system) or elapsed time > 5s user system elapsed distance_matrix_PMIME 7.038 0.02 7.061 * checking PDF version of manual ... [3s/3s] OK * checking HTML version of manual ... [0s/0s] OK * checking for non-standard things in the check directory ... OK * checking for detritus in the temp directory ... OK * DONE Status: 3 WARNINGs, 4 NOTEs