* using log directory 'd:/RCompile/CRANincoming/R-devel/AnalysisLin.Rcheck' * using R Under development (unstable) (2023-09-25 r85222 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 12.2.0 GNU Fortran (GCC) 12.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'AnalysisLin/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'AnalysisLin' version '0.1.0' * package encoding: UTF-8 * checking CRAN incoming feasibility ... NOTE Maintainer: 'The package maintainer ' New submission The Date field is over a month old. DESCRIPTION fields with placeholder content: Maintainer: The package maintainer * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking serialization versions ... OK * checking whether package 'AnalysisLin' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking for future file timestamps ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking use of S3 registration ... OK * checking dependencies in R code ... WARNING 'library' or 'require' calls not declared from: 'Hmisc' 'RANN' 'caret' 'corrplot' 'loadNamespace' or 'requireNamespace' calls not declared from: 'Hmisc' 'RANN' 'caret' 'corrplot' 'library' or 'require' calls in package code: 'Hmisc' 'RANN' 'caret' 'corrplot' Please use :: or requireNamespace() instead. See section 'Suggested packages' in the 'Writing R Extensions' manual. * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE automate_pca: no visible global function definition for 'prcomp' automate_pca: no visible global function definition for 'abline' automate_pca: no visible global function definition for 'text' automate_pca: no visible global function definition for 'legend' categoric_plot: no visible global function definition for 'par' categoric_plot: no visible global function definition for 'rainbow' categoric_plot: no visible global function definition for 'legend' categoric_plot: no visible global function definition for 'barplot' corr_cluster: no visible global function definition for 'install.packages' corr_cluster: no visible global function definition for 'rcorr' corr_cluster: no visible global function definition for 'as.dist' corr_cluster: no visible global function definition for 'hclust' corr_matrix: no visible global function definition for 'install.packages' corr_matrix: no visible global function definition for 'rcorr' desc_stat : : no visible global function definition for 'quantile' impute_knn: no visible global function definition for 'install.packages' impute_knn: no visible global function definition for 'preProcess' impute_knn: no visible global function definition for 'predict' impute_missing: no visible global function definition for 'median' jarque_test: no visible global function definition for 'pchisq' numeric_plot: no visible global function definition for 'lines' numeric_plot: no visible global function definition for 'density' Undefined global functions or variables: abline as.dist barplot density hclust install.packages legend lines median par pchisq prcomp preProcess predict quantile rainbow rcorr text Consider adding importFrom("grDevices", "rainbow") importFrom("graphics", "abline", "barplot", "legend", "lines", "par", "text") importFrom("stats", "as.dist", "density", "hclust", "median", "pchisq", "prcomp", "predict", "quantile") importFrom("utils", "install.packages") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking installed files from 'inst/doc' ... OK * checking files in 'vignettes' ... OK * checking examples ... ERROR Running examples in 'AnalysisLin-Ex.R' failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: categoric_plot > ### Title: Categorical Variables Plots > ### Aliases: categoric_plot > > ### ** Examples > > categoric_plot(data = mtcars) Error in categoric_plot(data = mtcars) : There is no categorical variable in the dataset Execution halted * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking re-building of vignette outputs ... ERROR Error(s) in re-building vignettes: --- re-building 'AnalysisLin-vignette.Rmd' using rmarkdown trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/utf8_1.2.3.zip' Content type 'application/zip' length 149806 bytes (146 KB) ================================================== downloaded 146 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/farver_2.1.1.zip' Content type 'application/zip' length 1505401 bytes (1.4 MB) ================================================== downloaded 1.4 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/labeling_0.4.3.zip' Content type 'application/zip' length 62679 bytes (61 KB) ================================================== downloaded 61 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/munsell_0.5.0.zip' Content type 'application/zip' length 245894 bytes (240 KB) ================================================== downloaded 240 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/RColorBrewer_1.1-3.zip' Content type 'application/zip' length 56062 bytes (54 KB) ================================================== downloaded 54 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/fansi_1.0.4.zip' Content type 'application/zip' length 311768 bytes (304 KB) ================================================== downloaded 304 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/pillar_1.9.0.zip' Content type 'application/zip' length 660232 bytes (644 KB) ================================================== downloaded 644 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/pkgconfig_2.0.3.zip' Content type 'application/zip' length 22629 bytes (22 KB) ================================================== downloaded 22 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/backports_1.4.1.zip' Content type 'application/zip' length 103867 bytes (101 KB) ================================================== downloaded 101 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/isoband_0.2.7.zip' Content type 'application/zip' length 1968424 bytes (1.9 MB) ================================================== downloaded 1.9 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/scales_1.2.1.zip' Content type 'application/zip' length 620318 bytes (605 KB) ================================================== downloaded 605 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/tibble_3.2.1.zip' Content type 'application/zip' length 692498 bytes (676 KB) ================================================== downloaded 676 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/withr_2.5.0.zip' Content type 'application/zip' length 233441 bytes (227 KB) ================================================== downloaded 227 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/checkmate_2.2.0.zip' Content type 'application/zip' length 724723 bytes (707 KB) ================================================== downloaded 707 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/htmlwidgets_1.6.2.zip' Content type 'application/zip' length 811479 bytes (792 KB) ================================================== downloaded 792 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/rstudioapi_0.15.0.zip' Content type 'application/zip' length 324285 bytes (316 KB) ================================================== downloaded 316 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/viridisLite_0.4.2.zip' Content type 'application/zip' length 1300155 bytes (1.2 MB) ================================================== downloaded 1.2 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/ggplot2_3.4.3.zip' Content type 'application/zip' length 3339954 bytes (3.2 MB) ================================================== downloaded 3.2 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/gtable_0.3.4.zip' Content type 'application/zip' length 226455 bytes (221 KB) ================================================== downloaded 221 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/gridExtra_2.3.zip' Content type 'application/zip' length 1109681 bytes (1.1 MB) ================================================== downloaded 1.1 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/data.table_1.14.8.zip' Content type 'application/zip' length 2290994 bytes (2.2 MB) ================================================== downloaded 2.2 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/htmlTable_2.4.1.zip' Content type 'application/zip' length 429486 bytes (419 KB) ================================================== downloaded 419 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/viridis_0.6.4.zip' Content type 'application/zip' length 3029701 bytes (2.9 MB) ================================================== downloaded 2.9 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/colorspace_2.1-0.zip' Content type 'application/zip' length 2636596 bytes (2.5 MB) ================================================== downloaded 2.5 MB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/Formula_1.2-5.zip' Content type 'application/zip' length 160787 bytes (157 KB) ================================================== downloaded 157 KB trying URL 'https://cran.r-project.org/bin/windows/contrib/4.4/Hmisc_5.1-1.zip' Content type 'application/zip' length 3545261 bytes (3.4 MB) ================================================== downloaded 3.4 MB Quitting from lines 121-122 [unnamed-chunk-13] (AnalysisLin-vignette.Rmd) Error: processing vignette 'AnalysisLin-vignette.Rmd' failed with diagnostics: package or namespace load failed for 'Hmisc' in loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]): there is no package called 'cluster' --- failed re-building 'AnalysisLin-vignette.Rmd' SUMMARY: processing the following file failed: 'AnalysisLin-vignette.Rmd' Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [13s] OK * checking HTML version of manual ... OK * DONE Status: 2 ERRORs, 1 WARNING, 2 NOTEs