* using log directory ‘/srv/hornik/tmp/CRAN/AnalysisLin.Rcheck’
* using R Under development (unstable) (2023-09-25 r85222)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 16.0.6 (15)
    GNU Fortran (Debian 13.2.0-4) 13.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘AnalysisLin/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AnalysisLin’ version ‘0.1.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [2s/3s] NOTE
Maintainer: ‘The package maintainer <zhiweilin27@gmail.com>’

New submission

The Date field is over a month old.

DESCRIPTION fields with placeholder content:
  Maintainer: The package maintainer <zhiweilin27@gmail.com>
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘AnalysisLin’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... WARNING
'library' or 'require' calls not declared from:
  ‘Hmisc’ ‘RANN’ ‘caret’ ‘corrplot’
'loadNamespace' or 'requireNamespace' calls not declared from:
  ‘Hmisc’ ‘RANN’ ‘caret’ ‘corrplot’
'library' or 'require' calls in package code:
  ‘Hmisc’ ‘RANN’ ‘caret’ ‘corrplot’
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] NOTE
automate_pca: no visible global function definition for ‘prcomp’
automate_pca: no visible global function definition for ‘abline’
automate_pca: no visible global function definition for ‘text’
automate_pca: no visible global function definition for ‘legend’
categoric_plot: no visible global function definition for ‘par’
categoric_plot: no visible global function definition for ‘rainbow’
categoric_plot: no visible global function definition for ‘legend’
categoric_plot: no visible global function definition for ‘barplot’
corr_cluster: no visible global function definition for
  ‘install.packages’
corr_cluster: no visible global function definition for ‘rcorr’
corr_cluster: no visible global function definition for ‘as.dist’
corr_cluster: no visible global function definition for ‘hclust’
corr_matrix: no visible global function definition for
  ‘install.packages’
corr_matrix: no visible global function definition for ‘rcorr’
desc_stat : <anonymous>: no visible global function definition for
  ‘quantile’
impute_knn: no visible global function definition for
  ‘install.packages’
impute_knn: no visible global function definition for ‘preProcess’
impute_knn: no visible global function definition for ‘predict’
impute_missing: no visible global function definition for ‘median’
jarque_test: no visible global function definition for ‘pchisq’
numeric_plot: no visible global function definition for ‘lines’
numeric_plot: no visible global function definition for ‘density’
Undefined global functions or variables:
  abline as.dist barplot density hclust install.packages legend lines
  median par pchisq prcomp preProcess predict quantile rainbow rcorr
  text
Consider adding
  importFrom("grDevices", "rainbow")
  importFrom("graphics", "abline", "barplot", "legend", "lines", "par",
             "text")
  importFrom("stats", "as.dist", "density", "hclust", "median", "pchisq",
             "prcomp", "predict", "quantile")
  importFrom("utils", "install.packages")
to your NAMESPACE file.
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] ERROR
Running examples in ‘AnalysisLin-Ex.R’ failed
The error most likely occurred in:

> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: categoric_plot
> ### Title: Categorical Variables Plots
> ### Aliases: categoric_plot
> 
> ### ** Examples
> 
> categoric_plot(data = mtcars)
Error in categoric_plot(data = mtcars) : 
  There is no categorical variable in the dataset
Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking re-building of vignette outputs ... [91s/91s] ERROR
Error(s) in re-building vignettes:
  ...
--- re-building ‘AnalysisLin-vignette.Rmd’ using rmarkdown
trying URL 'https://cran.r-project.org/src/contrib/utf8_1.2.3.tar.gz'
Content type 'application/x-gzip' length 241412 bytes (235 KB)
==================================================
downloaded 235 KB

trying URL 'https://cran.r-project.org/src/contrib/farver_2.1.1.tar.gz'
Content type 'application/x-gzip' length 1274363 bytes (1.2 MB)
==================================================
downloaded 1.2 MB

trying URL 'https://cran.r-project.org/src/contrib/labeling_0.4.3.tar.gz'
Content type 'application/x-gzip' length 10167 bytes
==================================================
downloaded 10167 bytes

trying URL 'https://cran.r-project.org/src/contrib/munsell_0.5.0.tar.gz'
Content type 'application/x-gzip' length 182653 bytes (178 KB)
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downloaded 178 KB

trying URL 'https://cran.r-project.org/src/contrib/RColorBrewer_1.1-3.tar.gz'
Content type 'application/x-gzip' length 11638 bytes (11 KB)
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downloaded 11 KB

trying URL 'https://cran.r-project.org/src/contrib/fansi_1.0.4.tar.gz'
Content type 'application/x-gzip' length 482055 bytes (470 KB)
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downloaded 470 KB

trying URL 'https://cran.r-project.org/src/contrib/pillar_1.9.0.tar.gz'
Content type 'application/x-gzip' length 444528 bytes (434 KB)
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downloaded 434 KB

trying URL 'https://cran.r-project.org/src/contrib/pkgconfig_2.0.3.tar.gz'
Content type 'application/x-gzip' length 6080 bytes
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downloaded 6080 bytes

trying URL 'https://cran.r-project.org/src/contrib/backports_1.4.1.tar.gz'
Content type 'application/x-gzip' length 26201 bytes (25 KB)
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trying URL 'https://cran.r-project.org/src/contrib/isoband_0.2.7.tar.gz'
Content type 'application/x-gzip' length 1591812 bytes (1.5 MB)
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trying URL 'https://cran.r-project.org/src/contrib/scales_1.2.1.tar.gz'
Content type 'application/x-gzip' length 270609 bytes (264 KB)
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trying URL 'https://cran.r-project.org/src/contrib/tibble_3.2.1.tar.gz'
Content type 'application/x-gzip' length 565982 bytes (552 KB)
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downloaded 552 KB

trying URL 'https://cran.r-project.org/src/contrib/withr_2.5.0.tar.gz'
Content type 'application/x-gzip' length 102089 bytes (99 KB)
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downloaded 99 KB

trying URL 'https://cran.r-project.org/src/contrib/checkmate_2.2.0.tar.gz'
Content type 'application/x-gzip' length 225941 bytes (220 KB)
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downloaded 220 KB

trying URL 'https://cran.r-project.org/src/contrib/htmlwidgets_1.6.2.tar.gz'
Content type 'application/x-gzip' length 867472 bytes (847 KB)
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trying URL 'https://cran.r-project.org/src/contrib/rstudioapi_0.15.0.tar.gz'
Content type 'application/x-gzip' length 115689 bytes (112 KB)
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trying URL 'https://cran.r-project.org/src/contrib/viridisLite_0.4.2.tar.gz'
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downloaded 1.2 MB

trying URL 'https://cran.r-project.org/src/contrib/ggplot2_3.4.3.tar.gz'
Content type 'application/x-gzip' length 2190947 bytes (2.1 MB)
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downloaded 2.1 MB

trying URL 'https://cran.r-project.org/src/contrib/gtable_0.3.4.tar.gz'
Content type 'application/x-gzip' length 130100 bytes (127 KB)
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trying URL 'https://cran.r-project.org/src/contrib/gridExtra_2.3.tar.gz'
Content type 'application/x-gzip' length 1062844 bytes (1.0 MB)
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downloaded 1.0 MB

trying URL 'https://cran.r-project.org/src/contrib/data.table_1.14.8.tar.gz'
Content type 'application/x-gzip' length 5338582 bytes (5.1 MB)
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downloaded 5.1 MB

trying URL 'https://cran.r-project.org/src/contrib/htmlTable_2.4.1.tar.gz'
Content type 'application/x-gzip' length 439117 bytes (428 KB)
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trying URL 'https://cran.r-project.org/src/contrib/viridis_0.6.4.tar.gz'
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downloaded 2.9 MB

trying URL 'https://cran.r-project.org/src/contrib/colorspace_2.1-0.tar.gz'
Content type 'application/x-gzip' length 2116339 bytes (2.0 MB)
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trying URL 'https://cran.r-project.org/src/contrib/Formula_1.2-5.tar.gz'
Content type 'application/x-gzip' length 128259 bytes (125 KB)
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downloaded 125 KB

trying URL 'https://cran.r-project.org/src/contrib/Hmisc_5.1-1.tar.gz'
Content type 'application/x-gzip' length 875858 bytes (855 KB)
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downloaded 855 KB

* installing *source* package ‘utf8’ ...
** package ‘utf8’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c as_utf8.c -o as_utf8.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c bytes.c -o bytes.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c context.c -o context.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c render.c -o render.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c render_table.c -o render_table.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c string.c -o string.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c text.c -o text.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8_encode.c -o utf8_encode.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8_format.c -o utf8_format.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8_normalize.c -o utf8_normalize.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8_valid.c -o utf8_valid.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8_width.c -o utf8_width.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c util.c -o util.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/array.c -o utf8lite/src/array.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/char.c -o utf8lite/src/char.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/encode.c -o utf8lite/src/encode.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/error.c -o utf8lite/src/error.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/escape.c -o utf8lite/src/escape.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/graph.c -o utf8lite/src/graph.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/graphscan.c -o utf8lite/src/graphscan.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/normalize.c -o utf8lite/src/normalize.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/render.c -o utf8lite/src/render.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/text.c -o utf8lite/src/text.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/textassign.c -o utf8lite/src/textassign.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/textiter.c -o utf8lite/src/textiter.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -Iutf8lite/src -fpic  -g -O3 -Wall -pedantic -c utf8lite/src/textmap.c -o utf8lite/src/textmap.o
ar rcs libcutf8lite.a utf8lite/src/array.o utf8lite/src/char.o utf8lite/src/encode.o utf8lite/src/error.o utf8lite/src/escape.o utf8lite/src/graph.o utf8lite/src/graphscan.o utf8lite/src/normalize.o utf8lite/src/render.o utf8lite/src/text.o utf8lite/src/textassign.o utf8lite/src/textiter.o utf8lite/src/textmap.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o utf8.so as_utf8.o bytes.o context.o init.o render.o render_table.o string.o text.o utf8_encode.o utf8_format.o utf8_normalize.o utf8_valid.o utf8_width.o util.o -L. -lcutf8lite -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-utf8/00new/utf8/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (utf8)
* installing *source* package ‘farver’ ...
** package ‘farver’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
using C++11
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c ColorSpace.cpp -o ColorSpace.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c Comparison.cpp -o Comparison.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c Conversion.cpp -o Conversion.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c encode.cpp -o encode.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c farver.cpp -o farver.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c init.cpp -o init.o
clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o farver.so ColorSpace.o Comparison.o Conversion.o encode.o farver.o init.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-farver/00new/farver/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (farver)
* installing *source* package ‘labeling’ ...
** package ‘labeling’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (labeling)
* installing *source* package ‘RColorBrewer’ ...
** package ‘RColorBrewer’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (RColorBrewer)
* installing *source* package ‘fansi’ ...
** package ‘fansi’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c assumptions.c -o assumptions.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c carry.c -o carry.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c has.c -o has.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c nchar.c -o nchar.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c normalize.c -o normalize.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c read.c -o read.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c rnchar.c -o rnchar.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c state.c -o state.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c strip.c -o strip.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c substr.c -o substr.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c tabs.c -o tabs.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c tohtml.c -o tohtml.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c trimws.c -o trimws.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c unhandled.c -o unhandled.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c utf8.c -o utf8.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c utils.c -o utils.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c wrap.c -o wrap.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fvisibility=hidden -fpic  -g -O3 -Wall -pedantic -c write.c -o write.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o fansi.so assumptions.o carry.o has.o init.o nchar.o normalize.o read.o rnchar.o state.o strip.o substr.o tabs.o tohtml.o trimws.o unhandled.o utf8.o utils.o wrap.o write.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-fansi/00new/fansi/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fansi)
* installing *source* package ‘pkgconfig’ ...
** package ‘pkgconfig’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgconfig)
* installing *source* package ‘backports’ ...
** package ‘backports’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dotsElt.c -o dotsElt.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dotsLength.c -o dotsLength.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c dotsNames.c -o dotsNames.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o backports.so dotsElt.o dotsLength.o dotsNames.o init.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-backports/00new/backports/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (backports)
* installing *source* package ‘isoband’ ...
** package ‘isoband’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 16.0.6 (15)’
using C++11
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c clip-lines.cpp -o clip-lines.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c init.cpp -o init.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c isoband.cpp -o isoband.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c polygon.cpp -o polygon.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c separate-polygons.cpp -o separate-polygons.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-clip-lines.cpp -o test-clip-lines.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-runner.cpp -o test-runner.o
clang++-16  -std=gnu++11 -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-error=enum-constexpr-conversion -c test-separate-polygons.cpp -o test-separate-polygons.o
clang++-16 -std=gnu++11 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o isoband.so clip-lines.o init.o isoband.o polygon.o separate-polygons.o test-clip-lines.o test-runner.o test-separate-polygons.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-isoband/00new/isoband/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (isoband)
* installing *source* package ‘withr’ ...
** package ‘withr’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (withr)
* installing *source* package ‘htmlwidgets’ ...
** package ‘htmlwidgets’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (htmlwidgets)
* installing *source* package ‘rstudioapi’ ...
** package ‘rstudioapi’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rstudioapi)
* installing *source* package ‘viridisLite’ ...
** package ‘viridisLite’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (viridisLite)
* installing *source* package ‘gtable’ ...
** package ‘gtable’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gtable)
* installing *source* package ‘data.table’ ...
** package ‘data.table’ successfully unpacked and MD5 sums checked
** using staged installation
zlib 1.2.13 is available ok
R CMD SHLIB supports OpenMP without any extra hint
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c assign.c -o assign.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c between.c -o between.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c bmerge.c -o bmerge.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c chmatch.c -o chmatch.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c cj.c -o cj.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c coalesce.c -o coalesce.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c dogroups.c -o dogroups.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fastmean.c -o fastmean.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fcast.c -o fcast.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fifelse.c -o fifelse.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fmelt.c -o fmelt.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c forder.c -o forder.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c frank.c -o frank.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fread.c -o fread.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c freadR.c -o freadR.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c froll.c -o froll.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c frollR.c -o frollR.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c frolladaptive.c -o frolladaptive.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fsort.c -o fsort.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fwrite.c -o fwrite.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c fwriteR.c -o fwriteR.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c gsumm.c -o gsumm.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c ijoin.c -o ijoin.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c inrange.c -o inrange.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c nafill.c -o nafill.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c nqrecreateindices.c -o nqrecreateindices.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c openmp-utils.c -o openmp-utils.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c quickselect.c -o quickselect.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c rbindlist.c -o rbindlist.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c reorder.c -o reorder.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c shift.c -o shift.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c snprintf.c -o snprintf.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c subset.c -o subset.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c transpose.c -o transpose.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c types.c -o types.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c uniqlist.c -o uniqlist.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c utils.c -o utils.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c vecseq.c -o vecseq.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp  -fpic  -g -O3 -Wall -pedantic -c wrappers.c -o wrappers.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o data.table.so assign.o between.o bmerge.o chmatch.o cj.o coalesce.o dogroups.o fastmean.o fcast.o fifelse.o fmelt.o forder.o frank.o fread.o freadR.o froll.o frollR.o frolladaptive.o fsort.o fwrite.o fwriteR.o gsumm.o ijoin.o init.o inrange.o nafill.o nqrecreateindices.o openmp-utils.o quickselect.o rbindlist.o reorder.o shift.o snprintf.o subset.o transpose.o types.o uniqlist.o utils.o vecseq.o wrappers.o -fopenmp -lz -L/home/hornik/tmp/R/lib -lR
PKG_CFLAGS = -fopenmp
PKG_LIBS = -fopenmp -lz
if [ "data.table.so" != "data_table.so" ]; then mv data.table.so data_table.so; fi
if [ "" != "Windows_NT" ] && [ `uname -s` = 'Darwin' ]; then install_name_tool -id data_table.so data_table.so; fi
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-data.table/00new/data.table/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (data.table)
* installing *source* package ‘colorspace’ ...
** package ‘colorspace’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c colorspace.c -o colorspace.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o colorspace.so colorspace.o init.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-colorspace/00new/colorspace/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (colorspace)
* installing *source* package ‘Formula’ ...
** package ‘Formula’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Formula)
* installing *source* package ‘munsell’ ...
** package ‘munsell’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (munsell)
* installing *source* package ‘pillar’ ...
** package ‘pillar’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pillar)
* installing *source* package ‘checkmate’ ...
** package ‘checkmate’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c all_missing.c -o all_missing.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c any_infinite.c -o any_infinite.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c any_missing.c -o any_missing.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c any_nan.c -o any_nan.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c checks.c -o checks.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c find_nchar.c -o find_nchar.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c guess_type.c -o guess_type.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c helper.c -o helper.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c integerish.c -o integerish.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c is_sorted.c -o is_sorted.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c qassert.c -o qassert.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c which_first.c -o which_first.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o checkmate.so all_missing.o any_infinite.o any_missing.o any_nan.o checks.o find_nchar.o guess_type.o helper.o init.o integerish.o is_sorted.o qassert.o which_first.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-checkmate/00new/checkmate/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (checkmate)
* installing *source* package ‘gridExtra’ ...
** package ‘gridExtra’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (gridExtra)
* installing *source* package ‘scales’ ...
** package ‘scales’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (scales)
* installing *source* package ‘tibble’ ...
** package ‘tibble’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘Debian clang version 16.0.6 (15)’
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c attributes.c -o attributes.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c coerce.c -o coerce.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c init.c -o init.o
clang-16  -I"/home/hornik/tmp/R/include" -DNDEBUG   -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -c matrixToDataFrame.c -o matrixToDataFrame.o
clang-16 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o tibble.so attributes.o coerce.o init.o matrixToDataFrame.o -L/home/hornik/tmp/R/lib -lR
installing to /tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/00LOCK-tibble/00new/tibble/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (tibble)
* installing *source* package ‘htmlTable’ ...
** package ‘htmlTable’ successfully unpacked and MD5 sums checked
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (htmlTable)
ERROR: dependencies ‘MASS’, ‘mgcv’ are not available for package ‘ggplot2’
* removing ‘/tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/ggplot2’
ERROR: dependency ‘ggplot2’ is not available for package ‘viridis’
* removing ‘/tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/viridis’
ERROR: dependencies ‘ggplot2’, ‘cluster’, ‘rpart’, ‘nnet’, ‘foreign’, ‘viridis’ are not available for package ‘Hmisc’
* removing ‘/tmp/RtmpW51vSh/RLIBS_1d53927dc2173b/Hmisc’

The downloaded source packages are in
	'/tmp/RtmpW51vSh/working_dir/RtmpXaBpKu/downloaded_packages'

Quitting from lines 121-122 [unnamed-chunk-13] (AnalysisLin-vignette.Rmd)
Error: processing vignette 'AnalysisLin-vignette.Rmd' failed with diagnostics:
there is no package called 'Hmisc'
--- failed re-building ‘AnalysisLin-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘AnalysisLin-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted

* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 ERRORs, 1 WARNING, 2 NOTEs