* installing *source* package ‘AllelicSeries’ ...
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-3) 14.2.0’
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c counting.cpp -o counting.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c lm.cpp -o lm.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c score.cpp -o score.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c skat.cpp -o skat.o
g++-14  -std=gnu++17 -I"/home/hornik/tmp/R-d-gcc-noLD/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3  -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c sumstats.cpp -o sumstats.o
sumstats.cpp: In function ‘arma::mat AnnoMat(const arma::colvec&, int)’:
sumstats.cpp:70:18: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
   70 |   for (int j=0; j<anno.n_elem; j++) {
      |                 ~^~~~~~~~~~~~
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R-d-gcc-noLD/lib -Wl,-O1 -o AllelicSeries.so RcppExports.o counting.o lm.o score.o skat.o sumstats.o -fopenmp -llapack -L/home/hornik/tmp/R-d-gcc-noLD/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R-d-gcc-noLD/lib -lR
installing to /home/hornik/tmp/CRAN_special_noLD/AllelicSeries.Rcheck/00LOCK-AllelicSeries/00new/AllelicSeries/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AllelicSeries)