R Under development (unstable) (2026-08-31 r90457 ucrt) -- "Unsuffered Consequences" Copyright (C) 2026 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(AgriDataTools) > test_check("AgriDataTools") DATA VALIDATION REPORT ---------------------------------------------------------------------- SUCCESS: Dataset passed all structural and biometrical integrity audits. Verified Rows: 120 | Genotypes: 40 | Replications: 3 | Phenotypic Traits: 7 ---------------------------------------------------------------------- DESCRIPTIVE SUMMARY STATISTICS SUMMARY STATISTICS FOR ALL TRAITS: ------------------------------------------------------------------------------------------ Trait N Mean Variance Std_Dev Std_Error Min Max Skewness PH 120 93.06167 23.928602 4.891687 0.44654789 81.00 106.00 0.1128776 SL 120 11.13333 1.045098 1.022300 0.09332283 8.50 13.50 -0.1462242 PL 120 26.62750 9.534952 3.087872 0.28188283 19.00 34.00 0.1369062 NOT 120 11.12500 8.143908 2.853753 0.26051084 5.00 17.00 -0.1568849 NOSS 120 19.13417 13.403097 3.661024 0.33420424 13.50 30.53 1.4178833 TGW 120 35.45208 10.633277 3.260871 0.29767540 28.46 44.25 0.5569434 GYPM 120 104.98333 626.756022 25.035096 2.28538112 40.00 167.00 0.3091805 Kurtosis -0.1904921 -0.4771177 -0.1318169 -0.7614953 1.4443857 0.2793547 0.1522824 ------------------------------------------------------------------------------------------ ===================================================================================== ANALYSIS OF VARIANCE (ANOVA) FOR CRD - TRAIT: PH ===================================================================================== Source Df SS MS F_value p_value Signif Genotypes 39 2367.0970 60.6948 10.107 < 0.001 *** Error 80 480.4067 6.0051 Total 119 2847.5037 ------------------------------------------------------------------------------------- Grand Mean : 93.0617 Coefficient of Variation (CV%) : 2.63 % ===================================================================================== ===================================================================================== ANALYSIS OF VARIANCE (ANOVA) FOR RCBD - TRAIT: PH ===================================================================================== Source Df SS MS F_value p_value Signif Replications 2 17.9302 8.9651 1.512 0.2269 ns Genotypes 39 2367.0970 60.6948 10.237 <0.001 *** Error 78 462.4765 5.9292 Total 119 2847.5037 ------------------------------------------------------------------------------------- Grand Mean : 93.0617 Coefficient of Variation (CV%) : 2.62 % ===================================================================================== GENETIC VARIABILITY COMPONENTS ---------------------------------------------------------------------- Biometric Parameter Estimated Value Genotypic Variance (Vg) 18.25520 Phenotypic Variance (Vp) 24.18439 Environmental Variance (Ve) 5.92919 Genotypic Coeff of Variation (GCV%) 4.59 % Phenotypic Coeff of Variation (PCV%) 5.28 % Broad-Sense Heritability (H2 %) 75.48 % Genetic Advance (GA) 7.6469 Genetic Advance as % of Mean (GAM) 8.22 % ---------------------------------------------------------------------- ========================================================================================== FISHER'S LEAST SIGNIFICANT DIFFERENCE (LSD) TEST Target Trait: PH | Significance Level (Alpha): 0.05 ========================================================================================== FISHER'S LSD CRITICAL METRICS : Estimates * Error Mean Square (EMS) : 5.92919 * Error Degrees of Freedom (df) : 78 * Standard Error of Difference (SED) : 1.98816 * Critical t-value (df = 78) : 1.99085 * LSD Value (Alpha = 0.05) : 3.95813 ------------------------------------------------------------------------------------------ RANKED MEANS AND STATISTICAL SIGNIFICANCE GROUPS: ------------------------------------------------------------------------------------------ Genotype Mean LSD_Letters G16 103.66667 a G7 100.83333 ab G3 100.66667 ab G25 99.66667 bc G27 99.66667 bc G9 99.16667 bcd G2 97.50000 bcde G20 97.30000 bcdef G11 96.66667 cdefg G13 96.33333 cdefgh G18 95.33333 defghi G14 95.00000 efghi G23 95.00000 efghi G5 94.33333 efghij G29 93.66667 efghijk G31 93.66667 efghijk G33 93.50000 fghijkl G21 93.33333 ghijkl G1 92.66667 hijklm G22 92.66667 hijklm G38 92.66667 hijklm G26 92.33333 ijklm G8 92.00000 ijklm G15 91.83333 ijklm G17 91.66667 ijklm G30 91.66667 ijklm G40 91.66667 ijklm G37 91.00000 jklmn G24 90.50000 jklmno G4 90.50000 jklmno G6 89.83333 klmno G39 89.66667 lmno G32 89.00000 mno G36 89.00000 mno G19 87.66667 nop G12 87.33333 nop G34 87.33333 nop G10 87.00000 op G28 84.83333 p G35 84.33333 p ------------------------------------------------------------------------------------------ Note: Means sharing the same letter are not significantly different at p <= 0.05. ========================================================================================== ========================================================================================== TUKEY'S HONESTLY SIGNIFICANT DIFFERENCE (HSD) TEST Target Trait: PH | Significance Level (Alpha): 0.05 ========================================================================================== TUKEY'S HSD CRITICAL METRICS : Estimates * Error Mean Square (EMS) : 5.92919 * Error Degrees of Freedom (df) : 78 * Number of Treatments/Genotypes : 40 * Standard Error of Mean (SE_mean) : 1.40584 * Critical q-value (k=40, df=78) : 5.72186 * Tukey HSD Value (Alpha = 0.05) : 8.04404 ------------------------------------------------------------------------------------------ RANKED MEANS AND STATISTICAL SIGNIFICANCE GROUPS: ------------------------------------------------------------------------------------------ Genotype Mean Tukey_Letters G16 103.66667 a G7 100.83333 ab G3 100.66667 abc G25 99.66667 abcd G27 99.66667 abcd G9 99.16667 abcd G2 97.50000 abcde G20 97.30000 abcde G11 96.66667 abcdef G13 96.33333 abcdef G18 95.33333 bcdefg G14 95.00000 bcdefgh G23 95.00000 bcdefgh G5 94.33333 bcdefgh G29 93.66667 bcdefgh G31 93.66667 bcdefgh G33 93.50000 bcdefgh G21 93.33333 bcdefgh G1 92.66667 cdefghi G22 92.66667 cdefghi G38 92.66667 cdefghi G26 92.33333 defghij G8 92.00000 defghij G15 91.83333 defghij G17 91.66667 defghij G30 91.66667 defghij G40 91.66667 defghij G37 91.00000 efghij G24 90.50000 efghij G4 90.50000 efghij G6 89.83333 efghij G39 89.66667 efghij G32 89.00000 fghij G36 89.00000 fghij G19 87.66667 ghij G12 87.33333 ghij G34 87.33333 ghij G10 87.00000 hij G28 84.83333 ij G35 84.33333 j ------------------------------------------------------------------------------------------ Note: Means sharing the same letter are not significantly different at p <= 0.05. ========================================================================================== ========================================================================================== SCHEFFE'S POST-HOC MEAN COMPARISON TEST Target Trait: PH | Significance Level (Alpha): 0.05 ========================================================================================== SCHEFFE'S CRITICAL METRICS : Estimates * Error Mean Square (EMS) : 5.92919 * Error Degrees of Freedom (df2) : 78 * Numerator Degrees of Freedom (df1) : 39 * Standard Error of Difference (SED) : 1.98816 * Critical F-value (df1=39, df2=78) : 1.55324 * Scheffe Critical Difference : 15.47402 ------------------------------------------------------------------------------------------ RANKED MEANS AND STATISTICAL SIGNIFICANCE GROUPS: ------------------------------------------------------------------------------------------ Genotype Mean Scheffe_Letters G16 103.66667 a G7 100.83333 ab G3 100.66667 ab G25 99.66667 abc G27 99.66667 abc G9 99.16667 abc G2 97.50000 abc G20 97.30000 abc G11 96.66667 abc G13 96.33333 abc G18 95.33333 abc G14 95.00000 abc G23 95.00000 abc G5 94.33333 abc G29 93.66667 abc G31 93.66667 abc G33 93.50000 abc G21 93.33333 abc G1 92.66667 abc G22 92.66667 abc G38 92.66667 abc G26 92.33333 abc G8 92.00000 abc G15 91.83333 abc G17 91.66667 abc G30 91.66667 abc G40 91.66667 abc G37 91.00000 abc G24 90.50000 abc G4 90.50000 abc G6 89.83333 abc G39 89.66667 abc G32 89.00000 abc G36 89.00000 abc G19 87.66667 bc G12 87.33333 bc G34 87.33333 bc G10 87.00000 bc G28 84.83333 c G35 84.33333 c ------------------------------------------------------------------------------------------ Note: Means sharing the same letter are not significantly different at p <= 0.05. ========================================================================================== [ FAIL 0 | WARN 0 | SKIP 0 | PASS 15 ] > > proc.time() user system elapsed 3.34 0.29 3.57