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Type 'q()' to quit R. > # This file is part of the standard setup for testthat. > # It is recommended that you do not modify it. > # > # Where should you do additional test configuration? > # Learn more about the roles of various files in: > # * https://r-pkgs.org/tests.html > # * https://testthat.r-lib.org/reference/test_package.html#special-files > > library(testthat) > library(AgeTopicModels) > > test_check("AgeTopicModels") ATM RAM occupation: 27742816GBSI Disease code that have less than 5 entries will be removed. CVB inference number: 1 ATM RAM occupation: 7680768GBSI Interation: 1 Interation: 2 Interation: 3 Interation: 4 Interation: 5 Current Lower bound -13037.6689789196 at iteration: 5 Interation: 6 Interation: 7 Interation: 8 Interation: 9 Interation: 10 Current Lower bound -13030.2426827756 at iteration: 10 Interation: 11 Interation: 12 Interation: 13 Interation: 14 Interation: 15 Current Lower bound -13019.8968771487 at iteration: 15 Interation: 16 Interation: 17 Interation: 18 Interation: 19 Interation: 20 Current Lower bound -13008.150106803 at iteration: 20 Interation: 21 Interation: 22 Interation: 23 Interation: 24 Interation: 25 Current Lower bound -13000.9369880133 at iteration: 25 Interation: 26 Interation: 27 Interation: 28 Interation: 29 Interation: 30 Current Lower bound -12998.7855374728 at iteration: 30 Interation: 31 Interation: 32 Interation: 33 Interation: 34 Interation: 35 Current Lower bound -12998.1236035833 at iteration: 35 Interation: 36 Interation: 37 Interation: 38 Interation: 39 Interation: 40 Current Lower bound -12999.2506850686 at iteration: 40 Optimization converged at step 40 Number of diseases selected: 7 LFA RAM occupation: 743188456GBSI ATM RAM occupation: 27755736GBSI ATM RAM occupation: 8958816GBSI Interation: 1 Current Lower bound -9980.36017387081 at iteration: 1 Interation: 2 Current Lower bound -9980.36017387081 at iteration: 2 Optimization converged at step 2 ATM RAM occupation: 9633968GBSI Interation: 1 Current Lower bound -20185.0658707871 at iteration: 1 Interation: 2 Current Lower bound -20162.1009512016 at iteration: 2 Interation: 3 Current Lower bound -20162.0917033012 at iteration: 3 Optimization converged at step 3 ATM RAM occupation: 10511152GBSI Interation: 1 Current Lower bound -30622.082415756 at iteration: 1 Interation: 2 Current Lower bound -30559.392219284 at iteration: 2 Interation: 3 Current Lower bound -30558.998602327 at iteration: 3 Interation: 4 Current Lower bound -30558.963991198 at iteration: 4 Interation: 5 Current Lower bound -30558.9634459933 at iteration: 5 Optimization converged at step 5 ATM RAM occupation: 9284600GBSI Interation: 1 Current Lower bound -28323.9289636647 at iteration: 1 Interation: 2 Current Lower bound -28239.7464056375 at iteration: 2 Interation: 3 Current Lower bound -28238.5934869706 at iteration: 3 Interation: 4 Current Lower bound -28238.4836238482 at iteration: 4 Interation: 5 Current Lower bound -28238.4713260292 at iteration: 5 Optimization converged at step 5 ATM RAM occupation: 8958816GBSI ATM RAM occupation: 8958816GBSI Interation: 1 Current Lower bound -9980.36017387081 at iteration: 1 Interation: 2 Current Lower bound -9980.36017387081 at iteration: 2 Optimization converged at step 2 ATM RAM occupation: 9633968GBSI ATM RAM occupation: 9633968GBSI Interation: 1 Current Lower bound -20184.7293392866 at iteration: 1 Interation: 2 Current Lower bound -20162.0988109436 at iteration: 2 Interation: 3 Current Lower bound -20162.0915116027 at iteration: 3 Interation: 4 Current Lower bound -20162.0964980366 at iteration: 4 Interation: 5 Current Lower bound -20162.0980557992 at iteration: 5 Optimization converged at step 5 ATM RAM occupation: 10511152GBSI ATM RAM occupation: 10511152GBSI Interation: 1 Current Lower bound -30622.2925606637 at iteration: 1 Interation: 2 Current Lower bound -30559.4257467139 at iteration: 2 Interation: 3 Current Lower bound -30558.9998956946 at iteration: 3 Interation: 4 Current Lower bound -30558.9644110249 at iteration: 4 Interation: 5 Current Lower bound -30558.9634917732 at iteration: 5 Optimization converged at step 5 ATM RAM occupation: 9284600GBSI ATM RAM occupation: 9284600GBSI Interation: 1 Current Lower bound -28326.4344889115 at iteration: 1 Interation: 2 Current Lower bound -28239.7749109853 at iteration: 2 Interation: 3 Current Lower bound -28238.6009457396 at iteration: 3 Interation: 4 Current Lower bound -28238.4857423061 at iteration: 4 Interation: 5 Current Lower bound -28238.4718445081 at iteration: 5 Interation: 6 Current Lower bound -28238.4678892899 at iteration: 6 Interation: 7 Current Lower bound -28238.467054557 at iteration: 7 Optimization converged at step 7 ATM RAM occupation: 4516256GBSI Interation: 1 Current Lower bound -10258.3228898416 at iteration: 1 Interation: 2 Current Lower bound -10258.3228898416 at iteration: 2 Optimization converged at step 2 ATM RAM occupation: 5058608GBSI Interation: 1 Current Lower bound -20789.6120742764 at iteration: 1 Interation: 2 Current Lower bound -20766.0359747396 at iteration: 2 Interation: 3 Current Lower bound -20766.0236341633 at iteration: 3 Optimization converged at step 3 ATM RAM occupation: 5802992GBSI Interation: 1 Current Lower bound -31677.0529925485 at iteration: 1 Interation: 2 Current Lower bound -31612.8632549489 at iteration: 2 Interation: 3 Current Lower bound -31612.4005497153 at iteration: 3 Interation: 4 Current Lower bound -31612.3555066396 at iteration: 4 Interation: 5 Current Lower bound -31612.3531403494 at iteration: 5 Optimization converged at step 5 ATM RAM occupation: 4595440GBSI Interation: 1 Current Lower bound -29374.8471403149 at iteration: 1 Interation: 2 Current Lower bound -29291.6645510864 at iteration: 2 Interation: 3 Current Lower bound -29290.5482265517 at iteration: 3 Interation: 4 Current Lower bound -29290.4310539831 at iteration: 4 Interation: 5 Current Lower bound -29290.4183056628 at iteration: 5 Optimization converged at step 5 ATM RAM occupation: 4516256GBSI ATM RAM occupation: 8958816GBSI Interation: 1 Current Lower bound -10258.3228898416 at iteration: 1 Interation: 2 Current Lower bound -10258.3228898416 at iteration: 2 Optimization converged at step 2 ATM RAM occupation: 9633968GBSI ATM RAM occupation: 9633968GBSI Interation: 1 Current Lower bound -20787.5758118011 at iteration: 1 Interation: 2 Current Lower bound -20766.026944153 at iteration: 2 Interation: 3 Current Lower bound -20766.0248002337 at iteration: 3 Interation: 4 Current Lower bound -20766.0266359174 at iteration: 4 Optimization converged at step 4 ATM RAM occupation: 10511152GBSI ATM RAM occupation: 10511152GBSI Interation: 1 Current Lower bound -31670.917130779 at iteration: 1 Interation: 2 Current Lower bound -31612.8532936143 at iteration: 2 Interation: 3 Current Lower bound -31612.4073763311 at iteration: 3 Interation: 4 Current Lower bound -31612.3570908447 at iteration: 4 Interation: 5 Current Lower bound -31612.3535742474 at iteration: 5 Interation: 6 Current Lower bound -31612.352024163 at iteration: 6 Optimization converged at step 6 ATM RAM occupation: 9284600GBSI ATM RAM occupation: 9284600GBSI Interation: 1 Current Lower bound -29368.3822162454 at iteration: 1 Interation: 2 Current Lower bound -29291.5626496106 at iteration: 2 Interation: 3 Current Lower bound -29290.5447739735 at iteration: 3 Interation: 4 Current Lower bound -29290.4322366816 at iteration: 4 Interation: 5 Current Lower bound -29290.4187497956 at iteration: 5 Interation: 6 Current Lower bound -29290.4148325051 at iteration: 6 Interation: 7 Current Lower bound -29290.4140199517 at iteration: 7 Optimization converged at step 7 simulated alpha: 0.932253900914568simulated alpha: 0.942741103711874simulated alpha: 0.884801254743395 Disease code that have less than 5 entries will be removed. CVB inference number: 1 ATM RAM occupation: 2586952GBSI Interation: 1 Interation: 2 Interation: 3 Interation: 4 Interation: 5 Current Lower bound -13553.6597845903 at iteration: 5 Interation: 6 Interation: 7 Interation: 8 Interation: 9 Interation: 10 Current Lower bound -13257.9705966935 at iteration: 10 Interation: 11 Interation: 12 Interation: 13 Interation: 14 Interation: 15 Current Lower bound -12966.9849371933 at iteration: 15 Interation: 16 Interation: 17 Interation: 18 Interation: 19 Interation: 20 Current Lower bound -12853.2921923117 at iteration: 20 Interation: 21 Interation: 22 Interation: 23 Interation: 24 Interation: 25 Current Lower bound -12828.4814604522 at iteration: 25 Interation: 26 Interation: 27 Interation: 28 Interation: 29 Interation: 30 Current Lower bound -12821.447449765 at iteration: 30 Interation: 31 Interation: 32 Interation: 33 Interation: 34 Interation: 35 Current Lower bound -12818.5568976578 at iteration: 35 Interation: 36 Interation: 37 Interation: 38 Interation: 39 Interation: 40 Current Lower bound -12817.2602700648 at iteration: 40 Interation: 41 Interation: 42 Interation: 43 Interation: 44 Interation: 45 Current Lower bound -12816.6080539805 at iteration: 45 Interation: 46 Interation: 47 Interation: 48 Interation: 49 Interation: 50 Current Lower bound -12816.0842569838 at iteration: 50 Interation: 51 Interation: 52 Interation: 53 Interation: 54 Interation: 55 Current Lower bound -12815.9165935753 at iteration: 55 Interation: 56 Interation: 57 Interation: 58 Interation: 59 Interation: 60 Current Lower bound -12815.8551166018 at iteration: 60 Interation: 61 Interation: 62 Interation: 63 Interation: 64 Interation: 65 Current Lower bound -12815.7849010412 at iteration: 65 Interation: 66 Interation: 67 Interation: 68 Interation: 69 Interation: 70 Current Lower bound -12815.6285942864 at iteration: 70 Interation: 71 Interation: 72 Interation: 73 Interation: 74 Interation: 75 Current Lower bound -12815.5560449493 at iteration: 75 Interation: 76 Interation: 77 Interation: 78 Interation: 79 Interation: 80 Current Lower bound -12815.5388230507 at iteration: 80 Interation: 81 Interation: 82 Interation: 83 Interation: 84 Interation: 85 Current Lower bound -12815.4908567539 at iteration: 85 Interation: 86 Interation: 87 Interation: 88 Interation: 89 Interation: 90 Current Lower bound -12815.4919426133 at iteration: 90 Optimization converged at step 90 [ FAIL 0 | WARN 7 | SKIP 1 | PASS 18 ] ══ Skipped tests (1) ═══════════════════════════════════════════════════════════ • empty test (1): 'test-lfa.R:18:1' [ FAIL 0 | WARN 7 | SKIP 1 | PASS 18 ] > > proc.time() user system elapsed 141.20 3.67 144.85