R Under development (unstable) (2025-09-16 r88844 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(AgeTopicModels)
> 
> test_check("AgeTopicModels")
[1] "ATM RAM occupation: "
0 GB
[1] "Disease code that have less than 5 entries will be removed."
[1] "CVB inference number: 1"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Interation: 2"
[1] "Interation: 3"
[1] "Interation: 4"
[1] "Interation: 5"
[1] "Current Lower bound -21800.6820877384 at iteration: 5"
[1] "Interation: 6"
[1] "Interation: 7"
[1] "Interation: 8"
[1] "Interation: 9"
[1] "Interation: 10"
[1] "Current Lower bound -21796.0616889359 at iteration: 10"
[1] "Interation: 11"
[1] "Interation: 12"
[1] "Interation: 13"
[1] "Interation: 14"
[1] "Interation: 15"
[1] "Current Lower bound -21786.1809992078 at iteration: 15"
[1] "Interation: 16"
[1] "Interation: 17"
[1] "Interation: 18"
[1] "Interation: 19"
[1] "Interation: 20"
[1] "Current Lower bound -21775.8791673807 at iteration: 20"
[1] "Interation: 21"
[1] "Interation: 22"
[1] "Interation: 23"
[1] "Interation: 24"
[1] "Interation: 25"
[1] "Current Lower bound -21768.818672368 at iteration: 25"
[1] "Interation: 26"
[1] "Interation: 27"
[1] "Interation: 28"
[1] "Interation: 29"
[1] "Interation: 30"
[1] "Current Lower bound -21765.2714432362 at iteration: 30"
[1] "Interation: 31"
[1] "Interation: 32"
[1] "Interation: 33"
[1] "Interation: 34"
[1] "Interation: 35"
[1] "Current Lower bound -21765.0219796423 at iteration: 35"
[1] "Interation: 36"
[1] "Interation: 37"
[1] "Interation: 38"
[1] "Interation: 39"
[1] "Interation: 40"
[1] "Current Lower bound -21767.4794279669 at iteration: 40"
[1] "Optimization converged at step 40"
[1] "Number of diseases selected: 7"
[1] "LFA RAM occupation: "
0.7 GB
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6441.74549764809 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6441.74549764809 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13069.3296721112 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13054.0459539168 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13054.0500348301 at iteration: 3"
[1] "Optimization converged at step 3"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -19721.050124209 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -19677.8938741844 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -19677.5561405475 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -19677.5208626971 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -19677.5185056253 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -26502.1207133187 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -26421.1446264051 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -26419.921045617 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -26419.7737014056 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -26419.7511127822 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6441.74549764809 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6441.74549764809 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13069.3184843104 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13054.0401714014 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13054.0492187391 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -13054.05184288 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -13054.0531077122 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -19722.3131875145 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -19677.9164873296 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -19677.5626403843 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -19677.5227690751 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -19677.5190886334 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -19677.5173872678 at iteration: 6"
[1] "Optimization converged at step 6"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -26505.1307843998 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -26421.1741650734 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -26419.9242081824 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -26419.7748324401 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -26419.7514814278 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -26419.7441562098 at iteration: 6"
[1] "Interation: 7"
[1] "Current Lower bound -26419.7421577342 at iteration: 7"
[1] "Optimization converged at step 7"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6593.3340779008 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6593.3340779008 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13403.5930007467 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13386.7292197318 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13386.7097219873 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -13386.7069347166 at iteration: 4"
[1] "Optimization converged at step 4"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -20255.9577767451 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -20208.1773421101 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -20207.8599402958 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -20207.8234716239 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -20207.8199224266 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -27303.9775559206 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -27218.4655974024 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -27217.2475645367 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -27217.1032924891 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -27217.0798289852 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6593.3340779008 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6593.3340779008 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13402.0682519251 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13386.7036342483 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13386.7076494691 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -13386.7067240366 at iteration: 4"
[1] "Optimization converged at step 4"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -20250.6916599658 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -20208.1667524949 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -20207.8623939562 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -20207.8240290623 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -20207.820146088 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -20207.818476128 at iteration: 6"
[1] "Optimization converged at step 6"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -27297.9555718484 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -27218.4494056234 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -27217.2578696601 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -27217.1054017788 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -27217.080607952 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -27217.073252965 at iteration: 6"
[1] "Interation: 7"
[1] "Current Lower bound -27217.0713620951 at iteration: 7"
[1] "Optimization converged at step 7"
[1] "simulated alpha: 0.932253900914568" "simulated alpha: 0.942741103711874"
[3] "simulated alpha: 0.884801254743395"
[ FAIL 0 | WARN 7 | SKIP 1 | PASS 18 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-lfa.R:15:1'

[ FAIL 0 | WARN 7 | SKIP 1 | PASS 18 ]
> 
> proc.time()
   user  system elapsed 
 188.64    5.64  199.39