R Under development (unstable) (2025-09-15 r88837 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(AgeTopicModels)
> 
> test_check("AgeTopicModels")
[1] "ATM RAM occupation: "
0 GB
[1] "Disease code that have less than 20 entry will be removed."
[1] "CVB inference number: 1"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Interation: 2"
[1] "Interation: 3"
[1] "Interation: 4"
[1] "Interation: 5"
[1] "Current Lower bound -11517.1462209096 at iteration: 5"
[1] "Interation: 6"
[1] "Interation: 7"
[1] "Interation: 8"
[1] "Interation: 9"
[1] "Interation: 10"
[1] "Current Lower bound -11515.7230342225 at iteration: 10"
[1] "Interation: 11"
[1] "Interation: 12"
[1] "Interation: 13"
[1] "Interation: 14"
[1] "Interation: 15"
[1] "Current Lower bound -11513.121444504 at iteration: 15"
[1] "Interation: 16"
[1] "Interation: 17"
[1] "Interation: 18"
[1] "Interation: 19"
[1] "Interation: 20"
[1] "Current Lower bound -11512.2389426368 at iteration: 20"
[1] "Interation: 21"
[1] "Interation: 22"
[1] "Interation: 23"
[1] "Interation: 24"
[1] "Interation: 25"
[1] "Current Lower bound -11512.3360232272 at iteration: 25"
[1] "Optimization converged at step 25"
[1] "Number of diseases selected: 7"
[1] "LFA RAM occupation: "
0.7 GB
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6441.74549764809 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6441.74549764809 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13069.6425948644 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13054.0469379201 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13054.050235109 at iteration: 3"
[1] "Optimization converged at step 3"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -19721.7211475906 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -19677.9007005845 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -19677.5584243958 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -19677.5216330089 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -19677.518749683 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -26501.4141790346 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -26421.1235313333 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -26419.9188821327 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -26419.7735227038 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -26419.7511105533 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6441.74549764809 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6441.74549764809 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13069.4852183891 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13054.0475044809 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13054.0504135871 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -13054.0520325293 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -13054.0531434076 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -19721.5009033579 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -19677.9018359622 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -19677.5603465219 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -19677.5219602963 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -19677.5188358253 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -19677.5172994536 at iteration: 6"
[1] "Optimization converged at step 6"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -26503.7436243275 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -26421.1638072804 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -26419.9249632244 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -26419.775184232 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -26419.7516329802 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -26419.7442183153 at iteration: 6"
[1] "Interation: 7"
[1] "Current Lower bound -26419.7421846272 at iteration: 7"
[1] "Optimization converged at step 7"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6593.3340779008 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6593.3340779008 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13403.3562956117 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13386.701049774 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13386.7062039886 at iteration: 3"
[1] "Optimization converged at step 3"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -20252.4976707858 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -20208.1664759914 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -20207.8570745695 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -20207.8240826916 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -20207.819914369 at iteration: 5"
[1] "Optimization converged at step 5"
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -27301.2364065779 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -27218.600454156 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -27217.2731905463 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -27217.1100748046 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -27217.0817197459 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -27217.0737428531 at iteration: 6"
[1] "Optimization converged at step 6"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -6593.3340779008 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -6593.3340779008 at iteration: 2"
[1] "Optimization converged at step 2"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -13401.7604639263 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -13386.7015415121 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -13386.7075347142 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -13386.7066838361 at iteration: 4"
[1] "Optimization converged at step 4"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -20251.674529594 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -20208.1918052594 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -20207.8669534815 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -20207.8246530779 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -20207.8203013723 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -20207.8184989133 at iteration: 6"
[1] "Optimization converged at step 6"
[1] "ATM RAM occupation: "
0 GB
[1] "ATM RAM occupation: "
0 GB
[1] "Interation: 1"
[1] "Current Lower bound -27296.7042619935 at iteration: 1"
[1] "Interation: 2"
[1] "Current Lower bound -27218.4382140582 at iteration: 2"
[1] "Interation: 3"
[1] "Current Lower bound -27217.2563638353 at iteration: 3"
[1] "Interation: 4"
[1] "Current Lower bound -27217.1051131464 at iteration: 4"
[1] "Interation: 5"
[1] "Current Lower bound -27217.080595879 at iteration: 5"
[1] "Interation: 6"
[1] "Current Lower bound -27217.0732752988 at iteration: 6"
[1] "Interation: 7"
[1] "Current Lower bound -27217.0713770058 at iteration: 7"
[1] "Optimization converged at step 7"
[1] "simulated alpha: 1.10316521529257" "simulated alpha: 1.06449822738321"
[3] "simulated alpha: 1.03072489874796"
[ FAIL 0 | WARN 15 | SKIP 1 | PASS 18 ]

══ Skipped tests (1) ═══════════════════════════════════════════════════════════
• empty test (1): 'test-lfa.R:14:1'

[ FAIL 0 | WARN 15 | SKIP 1 | PASS 18 ]
> 
> proc.time()
   user  system elapsed 
 143.03    3.43  146.46