installing dependencies ‘openxlsx2’, ‘rdhs’ also installing the dependency ‘iotools’ begin installing package ‘iotools’ begin installing package ‘openxlsx2’ * installing *source* package ‘iotools’ ... ** this is package ‘iotools’ version ‘0.3-5’ ** package ‘iotools’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpTiNNDj/R.INSTALLbf33d31aba31/iotools/src' gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c acc.c -o acc.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c as_output.c -o as_output.o as_output.c: In function ‘as_output_vector’: as_output.c:490:43: warning: variable ‘mod’ set but not used [-Wunused-but-set-variable] 490 | int key_flag = asInteger(sNamesFlag), mod = 0; | ^~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c ctapply.c -o ctapply.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c lnchunk.c -o lnchunk.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c rbind.c -o rbind.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split.c -o split.o split.c: In function ‘mat_split’: split.c:168:9: warning: ‘rnam’ may be used uninitialized [-Wmaybe-uninitialized] 168 | SET_STRING_ELT(rnam, i, R_BlankString); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ split.c:17:13: note: ‘rnam’ was declared here 17 | SEXP res, rnam; | ^~~~ gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split_df.c -o split_df.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c split_df_fw.c -o split_df_fw.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c stdio.c -o stdio.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c strutil.c -o strutil.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c tparse.c -o tparse.o gcc-14 -std=gnu23 -I"/home/hornik/tmp/R/include" -DNDEBUG -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c utils.c -o utils.o gcc-14 -std=gnu23 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o iotools.so acc.o as_output.o ctapply.o lnchunk.o rbind.o split.o split_df.o split_df_fw.o stdio.o strutil.o tparse.o utils.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpTiNNDj/R.INSTALLbf33d31aba31/iotools/src' installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-iotools/00new/iotools/libs ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (iotools) begin installing package ‘rdhs’ * installing *source* package ‘rdhs’ ... ** this is package ‘rdhs’ version ‘0.8.1’ ** package ‘rdhs’ successfully unpacked and MD5 sums checked ** using staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (rdhs) * installing *source* package ‘openxlsx2’ ... ** this is package ‘openxlsx2’ version ‘1.17’ ** package ‘openxlsx2’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++-14 (Debian 14.2.0-19) 14.2.0’ make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpdIKuju/R.INSTALLbf33f1db8880c/openxlsx2/src' g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c RcppExports.cpp -o RcppExports.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c date.cpp -o date.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c helper_functions.cpp -o helper_functions.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c load_workbook.cpp -o load_workbook.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c pugi.cpp -o pugi.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c strings_xml.cpp -o strings_xml.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c styles_xml.cpp -o styles_xml.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c write_file.cpp -o write_file.o g++-14 -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG -I. -I../inst/include/pugixml -I'/home/hornik/lib/R/Library/4.6/x86_64-linux-gnu/Rcpp/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -pedantic -mtune=native -c xlsb.cpp -o xlsb.o g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o openxlsx2.so RcppExports.o date.o helper_functions.o load_workbook.o pugi.o strings_xml.o styles_xml.o write_file.o xlsb.o -L/home/hornik/tmp/R/lib -lR make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpdIKuju/R.INSTALLbf33f1db8880c/openxlsx2/src' installing to /home/hornik/tmp/CRAN_special_donttest/Library/00LOCK-openxlsx2/00new/openxlsx2/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (openxlsx2) checking AgePopDenom_1.0.0.tar.gz ... Depends: Package: AgePopDenom Depends: R (>= 4.1.0) Imports: TMB, dplyr, curl, exactextractr, ggplot2, numDeriv, pdist, utils, cli, tibble, terra, tidyr, httr, gstat, sp, sf Timings: user system elapsed AgePopDenom 163.066 9.586 179.423 Results: Check status summary: NOTE Source packages 1 Check results summary: AgePopDenom ... NOTE * checking CRAN incoming feasibility ... [4s/7s] NOTE * checking for non-standard things in the check directory ... NOTE