* using log directory ‘/srv/hornik/tmp/CRAN_pretest/AccRQA.Rcheck’
* using R Under development (unstable) (2025-12-17 r89193)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 21.1.6 (2)
    Debian flang version 21.1.6 (2)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* checking for file ‘AccRQA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘AccRQA’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Jan Novotny <jan.novotny@physics.slu.cz>’

New submission

Possibly misspelled words in DESCRIPTION:
  DET (14:238)
  ENTR (14:320)
  RQA (14:59, 14:179)
  TT (14:277)
  laminarity (14:244)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘AccRQA’ can be installed ... [8s/8s] OK
* used C++ compiler: ‘Debian clang version 21.1.7 (1)’
* checking C++ specification ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... WARNING
Found a ‘configure’ file without source file ‘configure.ac’ or
‘configure.in’ . An Open Source package must include its autoconf
sources.
Non-standard files/directories found at top level:
  ‘include’ ‘version.txt’
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/1s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [5s/5s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... NOTE
Package has both ‘src/Makevars.in’ and ‘src/Makevars’.
Installation with --no-configure' is unlikely to work.  If you intended
‘src/Makevars’ to be used on Windows, rename it to ‘src/Makevars.win’
otherwise remove it.  If ‘configure’ created ‘src/Makevars’, you need a
‘cleanup’ script.
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [34s/3s] NOTE
Examples with CPU (user + system) or elapsed time > 5s
                 user system elapsed
accrqa_RP      10.134  0.384   0.649
plot.accrqa_rp  9.373  0.309   1.030
Examples with CPU time > 2.5 times elapsed time
                   user system elapsed  ratio
accrqa_RR_target  1.058  0.044   0.034 32.412
accrqa_RP        10.134  0.384   0.649 16.206
plot.accrqa_rp    9.373  0.309   1.030  9.400
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [25s/2s] NOTE
  Running ‘testthat.R’ [25s/2s]
Running R code in ‘testthat.R’ had CPU time 11.2 times elapsed time
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [45s/13s] NOTE
Re-building vignettes had CPU time 3.5 times elapsed time
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 WARNING, 5 NOTEs