* using log directory ‘/home/hornik/tmp/CRAN_pretest/ARGHelpR.Rcheck’
* using R Under development (unstable) (2026-10-14 r90673)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    Debian clang version 23.1.0 (2)
    Debian flang version 23.1.0 (2)
* running under: Debian GNU/Linux forky/sid
* using session charset: UTF-8
* current time: 2026-10-15 19:54:04 UTC
* checking for file ‘ARGHelpR/DESCRIPTION’ ... OK
* this is package ‘ARGHelpR’ version ‘1.0.0’
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [3s/5s] NOTE
Maintainer: ‘Keaka Farleigh <keakafarleigh@gmail.com>’

New submission

Possibly misspelled words in DESCRIPTION:
  ARG (13:139)
  ARGHelpR (13:263)
  ARGs (13:303)
  Introgression (4:43)
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ARGHelpR’ can be installed ... [1s/1s] OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [2s/2s] OK
* checking Rd files ... [0s/0s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... NOTE
Rd file 'argplot.Rd':
  \examples lines wider than 100 characters:
     test_plot <- argplot(arg = rattlesnake_args[[1]][1,4], pop1 = pop1$sample, pop2 = pop2$sample, col = c("#71BED6","#EDAF49"))

Rd file 'argstats.Rd':
  \examples lines wider than 100 characters:
     Test <- argstats(arg.dat = rattlesnake_args, pop1 = pop1$sample, pop2 = pop2$sample, pop1.name = "pop1", pop2.name = "pop2")

Rd file 'argstats_helper.Rd':
  \examples lines wider than 100 characters:
     Test <- argstats(arg.dat = rattlesnake_args, pop1 = pop1$sample, pop2 = pop2$sample, pop1.name = "pop1", pop2.name = "pop2")

Rd file 'identify_argcandidates_divergence.Rd':
  \examples lines wider than 100 characters:
     stat_res <- argstats(arg.dat = rattlesnake_args, pop1 = pop1$sample, pop2 = pop2$sample, pop1.name = "pop1", pop2.name = "pop2")

Rd file 'identify_argcandidates_shared.Rd':
  \examples lines wider than 100 characters:
     stat_res <- argstats(arg.dat = rattlesnake_args, pop1 = pop1$sample, pop2 = pop2$sample, pop1.name = "pop1", pop2.name = "pop2")

Rd file 'rattlesnake_args.Rd':
  \examples lines wider than 100 characters:
     Test <- argstats(arg.dat = rattlesnake_args, pop1 = pop1$sample, pop2 = pop2$sample, pop1.name = "pop1", pop2.name = "pop2")

These lines will be truncated in the PDF manual.
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [0s/0s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [2s/2s] OK
  Running ‘testthat.R’ [1s/1s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [71s/71s] OK
* checking PDF version of manual ... [2s/2s] OK
* checking HTML version of manual ... [0s/0s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 2 NOTEs