R Under development (unstable) (2024-01-07 r85787 ucrt) -- "Unsuffered Consequences"
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> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(APackOfTheClones)

Thank you for using APackOfTheClones v1.0.0

if you use this package in your paper/study, please cite with
`citation("APackOfTheClones")`

*** DEPRECATION NOTICE TO RETURNING USERS OF VERSION 0.1.x *** 
ALL v0.1.x functions are deprecated, and the workflow has been completely revamped - now depending on the scRepertoire v2 package - which allows for the processing of multi-sampled single cell data. Please read the vignettes with `browseVignettes("APackOfTheClones")`or visit https://qile0317.github.io/APackOfTheClones/

> 
> testthat::test_check("APackOfTheClones")
[ FAIL 0 | WARN 0 | SKIP 12 | PASS 167 ]

══ Skipped tests (12) ══════════════════════════════════════════════════════════
• On CRAN (12): 'test-APOTCPlot.R:6:2', 'test-AdjustAPOTC.R:28:3',
  'test-ApotcData.R:127:2', 'test-ApotcData.R:182:2', 'test-Main_algo.R:5:3',
  'test-Main_algo.R:47:3', 'test-Main_algo.R:95:5', 'test-Main_algo.R:120:5',
  'test-Main_algo.R:162:5', 'test-noscript-defaultApotcPlot.R:5:3',
  'test-plot_API.R:39:5', 'test-vizAPOTC.R:4:2'

[ FAIL 0 | WARN 0 | SKIP 12 | PASS 167 ]
Deleting unused snapshots:
• plot_API/plot-api-all.svg
• vizAPOTC/void-retscale-tryplace-no-order-brl-c4-5.svg
> 
> proc.time()
   user  system elapsed 
  13.56    1.17   14.75