R Under development (unstable) (2024-01-07 r85787 ucrt) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
> 
> library(testthat)
> library(APackOfTheClones)

Thank you for using APackOfTheClones v1.0.0

if you use this package in your paper/study, please cite with
`citation("APackOfTheClones")`

*** DEPRECATION NOTICE TO RETURNING USERS OF VERSION 0.1.x *** 
ALL v0.1.x functions are deprecated, and the workflow has been completely revamped - now depending on the scRepertoire v2 package - which allows for the processing of multi-sampled single cell data. Please see the new vignette, showing a superior way to achieve the same visualizations with more features. 

> 
> testthat::test_check("APackOfTheClones")
[ FAIL 0 | WARN 0 | SKIP 6 | PASS 169 ]

══ Skipped tests (6) ═══════════════════════════════════════════════════════════
• On CRAN (6): 'test-APOTCPlot.R:3:2', 'test-APOTCPlot.R:15:2',
  'test-AdjustAPOTC.R:12:3', 'test-plot_API.R:39:5', 'test-vizAPOTC.R:3:2',
  'test-vizAPOTC.R:12:2'

[ FAIL 0 | WARN 0 | SKIP 6 | PASS 169 ]
Deleting unused snapshots:
• AdjustAPOTC/adjustapotc-plot-repulsed-with-label.svg
• AdjustAPOTC/adjustapotc-plot.svg
• plot_API/plot-api-all.svg
• vizAPOTC/ret-scale-try-place-scrambled-5.svg
> 
> proc.time()
   user  system elapsed 
  11.53    0.90   12.39