test_that("plot_APCheatmap", { testthat::skip_if_not_installed("mgcv") data(drug_deaths) # plot hexamap of observed data gg1 <- plot_APCheatmap(dat = drug_deaths, y_var = "mortality_rate") gg2 <- plot_APCheatmap(dat = drug_deaths, y_var = "mortality_rate", bin_heatmap = FALSE, apc_range = list("cohort" = 1980:2010)) gg3 <- plot_APCheatmap(dat = drug_deaths, y_var = "mortality_rate", markLines_list = list("age" = c(20,70), "period" = c(1990,2010), "cohort" = c(1985,1993)), apc_range = list("cohort" = 1980:2010)) gg4 <- plot_APCheatmap(dat = drug_deaths, y_var = "mortality_rate", markLines_list = list("age" = c(20,70), "period" = c(1990,2010), "cohort" = c(1985,1993)), apc_range = list("cohort" = 1980:2010), plot_CI = FALSE) expect_s3_class(gg1, class = c("gg","ggplot")) expect_s3_class(gg2, class = c("gg","ggplot")) expect_s3_class(gg3, class = c("gg","ggplot")) expect_s3_class(gg4, class = c("gg","ggplot")) # plot heatmap of smoothed structure model <- gam(mortality_rate ~ te(period, age), data = drug_deaths) drug_deaths$mortality_rate <- drug_deaths$mortality_rate + 1 model_logLink <- bam(mortality_rate ~ te(period, age), family = Gamma(link = "log"), data = drug_deaths) gg1 <- plot_APCheatmap(dat = drug_deaths, model = model) gg2 <- plot_APCheatmap(dat = drug_deaths, model = model_logLink) gg3 <- plot_APCheatmap(dat = drug_deaths, model = model_logLink, method_expTransform = "delta") expect_s3_class(gg1, class = c("gg","ggplot")) expect_s3_class(gg2, class = c("gg","ggplot")) expect_s3_class(gg3, class = c("gg","ggplot")) }) test_that("plot_APChexamap", { testthat::skip_if_not_installed("mgcv") data(travel) data(drug_deaths) # helper functions expect_identical(round(compute_xCoordinate(period_vec = c(1980,1999)), 2), c(1714.73,1731.18)) expect_identical(compute_yCoordinate(period_vec = c(1990, 1999), age_vec = c(20,50)), c(-975.0, -949.5)) # plot hexamap of observed data expect_null(plot_APChexamap(dat = drug_deaths, y_var = "mortality_rate")) expect_null(plot_APChexamap(dat = drug_deaths, y_var = "mortality_rate", y_var_logScale = TRUE, color_range = c(1,50), apc_range = list("cohort" = 1980:2010))) expect_null(plot_APChexamap(dat = travel, y_var = "mainTrip_distance", y_var_logScale = TRUE)) # error when 0 values are logarithmized expect_error(plot_APChexamap(dat = drug_deaths, y_var = "mortality_rate", y_var_logScale = TRUE, color_range = c(0,50))) # plot hexamap of smoothed structure model <- gam(mortality_rate ~ te(period, age), data = drug_deaths) expect_null(plot_APChexamap(dat = drug_deaths, model = model)) })