# context("ANOPA:: Testing emProportions function") # # expect_output( str(res), "data.frame") # # expect_equal( "ggplot" %in% class(plt), TRUE) # # expect_message( p <- superbPlot(dta2a, etc )) # # expect_error(), expect_warning(), expect_condition( , class = "") # test_that("TESTS of emFrequencies function (1/3)", { # ########################################################## # # Testing the errors # ########################################################## # w <- anofa(Frequency ~ Intensity * Pitch, minimalExample) # expect_error( emFrequencies(2, ~ A | B )) # expect_error( emFrequencies(w, 2)) # expect_error( emFrequencies(w, ~ A * B )) # expect_error( emFrequencies(w, ~ A | B + C | D )) # expect_error( emFrequencies(w, AliBaba ~ A | A )) # expect_error( emFrequencies(w, ~ A | B )) # }) # test_that("TESTS of emFrequencies function (2/3)", { # ########################################################## # # Testing the dataset's example # ########################################################## # #### LANDIS ET AL., 2013 #### # L <- anofa( obsfreq ~ provider * program, LandisBarrettGalvin2013) # expect_equal(L$results[1,1], 533.18742, tolerance = 0.0001) # expect_equal(L$results[4,1], 18.8455, tolerance = 0.0001) # plt <- anofaPlot(L) # expect_output( str(plt), "list") # expect_equal( "ggplot" %in% class(plt), TRUE) # e <- emFrequencies(L, ~ program | provider ) # expect_equal(e$results[1,1], 18.6486, tolerance = 0.0001) # expect_equal(e$results[5,1], 137.0773, tolerance = 0.0001) # expect_equal(L$results[3,1]+L$results[4,1], sum(e$results[,1]), tol = 0.0001) # #### LIGHT & MARGOLIN, 1971 #### # w <- anofa( obsfreq ~ vocation * gender, LightMargolin1971) # expect_equal(w$results[1,1], 266.88945, tolerance = 0.0001) # expect_equal(w$results[4,1], 49.88669, tolerance = 0.0001) # plt <- anofaPlot(w) # expect_output( str(plt), "list") # expect_equal( "ggplot" %in% class(plt), TRUE) # e <- emFrequencies(w, ~ gender | vocation ) # expect_equal(e$results[1,1], 0.0081, tolerance = 0.0001) # expect_equal(e$results[5,1], 42.3478, tolerance = 0.0001) # expect_equal(w$results[3,1]+w$results[4,1], sum(e$results[,1]), tol = 0.0001) # #### Les greffons GILLET, 1993 #### # w <- anofa( Freq ~ species * location * florished, Gillet1993) # expect_equal(w$results[1,1], 515.9772, tolerance = 0.0001) # expect_equal(w$results[4,1], 24.9552, tolerance = 0.0001) # plt <- anofaPlot(w) # expect_output( str(plt), "list") # expect_equal( "ggplot" %in% class(plt), TRUE) # e <- emFrequencies(w, ~ species | florished ) # expect_equal(e$results[1,1], 43.8481, tolerance = 0.0001) # expect_equal(e$results[2,1], 33.7782, tolerance = 0.0001) # expect_equal(w$results[2,1]+w$results[6,1], sum(e$results[,1]), tol = 0.0001) # #### Detergent RIES ET SMITH, 1963 #### # # Removed because Prof Ripley is not happy # # dta <- data.frame(Detergent) # # w <- anofa( Freq ~ Temperature * M_User * Preference * Water_softness, dta) # # expect_equal(w$results[5,1], 0.5015, tolerance = 0.0001) # # expect_equal(w$results[9,1], 20.5815, tolerance = 0.0001) # # plt <- anofaPlot(w) # # expect_output( str(plt), "list") # # expect_equal( "ggplot" %in% class(plt), TRUE) # # e <- emFrequencies(w, ~ M_User | Preference ) # # expect_equal(e$results[1,1], 17.4943, tolerance = 0.0001) # # expect_equal(e$results[2,1], 5.0084, tolerance = 0.0001) # # expect_equal(w$results[3,1]+w$results[9,1], sum(e$results[,1]), tol = 0.0001) # }) # test_that("TESTS of emFrequencies function (3/3)", { # ########################################################## # # Testing decompositions TWO FACTOR DESIGN # ########################################################## # # testing A|B and B|A of A*B (2x3) design # set.seed(42) # dta <- GRF( list(A=c("a1","a2"), B=c("b1","b2","b3") ), 100, # c(rep(1/10,5),1/2) ) ## results in an interaction A:B # w <- anofa( Freq ~ A * B, dta) # # decomposition of A for each level of B # gA <- w$results[[2,1]] + w$results[[4,1]] # A et A:B # tt <- emFrequencies(w, ~ A | B ) # gB <- sum(tt$results[,1]) # # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B for each level of A # gA <- w$results[[3,1]] + w$results[[4,1]] # B et A:B # tt <- emFrequencies(w, ~ B | A ) # gB <- sum(tt$results[,1]) # # expect_equal(gA, gB, tolerance = 0.0001) # ########################################################## # # Testing decompositions THREE FACTOR DESIGN # ########################################################## # set.seed(42) # dta <- GRF( list(A=c("a1","a2"), B=c("b1","b2","b3"), C=c("c1","c2","c3","c4")), 1000, # c(rep(1/50,22),.28,.28) ) ## results in an interaction B:C # w <- anofa( Freq ~ A * B * C, dta) # #·························································· # # 1 factor within 1 factor # #·························································· # # testing A|B, A|C, B|C, B|A, C|A, C|B of A*B*C design # #·························································· # # decomposition of A | B # gA <- w$results[[2,1]] + w$results[[5,1]] # A et A:B # tt <- emFrequencies(w, ~ A | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A | C # gA <- w$results[[2,1]] + w$results[[6,1]] # A et A:C # tt <- emFrequencies(w, ~ A | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B | A # gA <- w$results[[3,1]] + w$results[[5,1]] # B et A:B # tt <- emFrequencies(w, ~ B | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B | C # gA <- w$results[[3,1]] + w$results[[7,1]] # B et B:C # tt <- emFrequencies(w, ~ B | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C | A # gA <- w$results[[4,1]] + w$results[[6,1]] # C et A:C # tt <- emFrequencies(w, ~ C | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C | B # gA <- w$results[[4,1]] + w$results[[7,1]] # C et B:C # tt <- emFrequencies(w, ~ C | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # #·························································· # # 2 factors within 1 factor # #·························································· # # testing A*B|C, A*C|B, B*C|A of A*B*C design # #·························································· # # decomposition of A*B | C # gA <- sum(w$results[c(2,3,5,6,7,8),1]) # A + B + AB + A:C + B:C + AB:C # tt <- emFrequencies(w, ~ A * B | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*C | B # gA <- sum(w$results[c(2,4,6,5,7,8),1]) # A + C + AC + A:B + C:B + AC:B # tt <- emFrequencies(w, ~ A * C | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*C | A # gA <- sum(w$results[c(3,4,7,5,6,8),1]) # B + C + BC + B:A + C:A + BC:A # tt <- emFrequencies(w, ~ B * C | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # #·························································· # # 1 factor within 2 factors # #·························································· # # testing A|B*C, B|A*C, C|A*B of A*B*C design # #·························································· # # decomposition of A | B*C # gA <- sum(w$results[c(2,5,6,8),1]) # (A) + (A):B + (A):C + (A):BC # tt <- emFrequencies(w, ~ A | B*C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B | A*C # gA <- sum(w$results[c(3,5,7,8),1]) # (B) + (B):A + (B):C + (B):AC # tt <- emFrequencies(w, ~ B | A*C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C | A*B # gA <- sum(w$results[c(4,6,7,8),1]) #(C) + (C):A + (C):B + (C):AB # tt <- emFrequencies(w, ~ C | A * B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # ########################################################## # # Testing decompositions FOUR FACTOR DESIGN # ########################################################## # set.seed(42) # dta <- GRF( list(A=c("a1","a2"), B=c("b1","b2","b3"), # C=c("c1","c2","c3","c4"), D=c("d1","d2","d3","d4","d5")), 2000, # c(rep(1/200,118),.41/2,.41/2) ) ## results in an interaction B:C # w <- anofa( Freq ~ A * B * C * D, dta) # #·························································· # # 1 factor within 1 factor # #·························································· # # testing A|B, A|C, A|D, B|A, B|C, B|D, C|A, C|B, C|D, # # D|A, D|B, D|C of A*B*C*D design # #·························································· # # decomposition of A | B # gA <- w$results[[2,1]] + w$results[[6,1]] # A et A:B # tt <- emFrequencies(w, ~ A | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A | C # gA <- w$results[[2,1]] + w$results[[7,1]] # A et A:C # tt <- emFrequencies(w, ~ A | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A | D # gA <- w$results[[2,1]] + w$results[[8,1]] # A et A:D # tt <- emFrequencies(w, ~ A | D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B | A # gA <- w$results[[3,1]] + w$results[[6,1]] # B et A:B # tt <- emFrequencies(w, ~ B | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B | C # gA <- w$results[[3,1]] + w$results[[9,1]] # B et B:C # tt <- emFrequencies(w, ~ B | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B | D # gA <- w$results[[3,1]] + w$results[[10,1]] # B et B:D # tt <- emFrequencies(w, ~ B | D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C | A # gA <- w$results[[4,1]] + w$results[[7,1]] # C et A:C # tt <- emFrequencies(w, ~ C | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C | B # gA <- w$results[[4,1]] + w$results[[9,1]] # C et B:C # tt <- emFrequencies(w, ~ C | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C | D # gA <- w$results[[4,1]] + w$results[[11,1]] # C et D:C # tt <- emFrequencies(w, ~ C | D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of D | A # gA <- w$results[[5,1]] + w$results[[8,1]] # D et D:A # tt <- emFrequencies(w, ~ D | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of D | B # gA <- w$results[[5,1]] + w$results[[10,1]] # D et D:B # tt <- emFrequencies(w, ~ D | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of D | C # gA <- w$results[[5,1]] + w$results[[11,1]] # D et D:C # tt <- emFrequencies(w, ~ D | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # #·························································· # # 2 factors within 1 factor # #·························································· # # testing A*B|C, A*B|D, A*C|B, A*C|D, A*D|B, A*D|C, # # B*C|A, B*C|D, B*D|A, B*D|C, # # C*D|A, C*D|B of A*B*C*D design # #·························································· # # decomposition of A*B | C # gA <- sum(w$results[c(2,3,6,7,9,12),1]) # A + B + AB + A:C + B:C + AB:C # tt <- emFrequencies(w, ~ A *B | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*B | D # gA <- sum(w$results[c(2,3,6,8,10,13),1]) # A + B + AB + A:D + B:D + AB:D # tt <- emFrequencies(w, ~ A *B | D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*C | B # gA <- sum(w$results[c(2,4,7,6,9,12),1]) # A + C + AC + A:B + C:B + AC:B # tt <- emFrequencies(w, ~ A *C | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*C | D # gA <- sum(w$results[c(2,4,7,8,11,14),1]) # A + C + AC + A:D + C:D + AC:D # tt <- emFrequencies(w, ~ A *C | D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*D | B # gA <- sum(w$results[c(2,5,8,6,10,13),1]) # A + D + AD + A:B + D:B + AD:B # tt <- emFrequencies(w, ~ A * D | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*D | C # gA <- sum(w$results[c(2,5,8,7,11,14),1]) # A + D + AD + A:C + D:C + AD:C # tt <- emFrequencies(w, ~ A * D | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*C | A # gA <- sum(w$results[c(3,4,9,6,7,12),1]) # B + C + BC + B:A + C:A + BC:A # tt <- emFrequencies(w, ~ B * C | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*C | D # gA <- sum(w$results[c(3,4,9,10,11,15),1]) # B + C + BC + B:D + C:D + BC:D # tt <- emFrequencies(w, ~ B * C | D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*D | A # gA <- sum(w$results[c(3,5,10,6,8,13),1]) # B + D + BD + B:A + D:A + BD:A # tt <- emFrequencies(w, ~ B * D | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*D | C # gA <- sum(w$results[c(3,5,10,9,11,15),1]) # B + D + BD + B:C + D:C + BD:C # tt <- emFrequencies(w, ~ B * D | C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C*D | A # gA <- sum(w$results[c(4,5,11,7,8,14),1]) # C + D + CD + C:A + D:A + CD:A # tt <- emFrequencies(w, ~ C * D | A ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C*D | B # gA <- sum(w$results[c(4,5,11,9,10,15),1]) # C + D + CD + C:B + D:B + CD:B # tt <- emFrequencies(w, ~ C * D | B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # #·························································· # # 2 factors within 2 factors # #·························································· # # testing A*B|C*D, A*C|B*D, A*D|B*C, # # B*C|A*D, B*D|A*C, C*D|A*B of A*B*C*D design # #·························································· # # decomposition of A*B | C*D # gA <- sum(w$results[c(2,3,6,7,8,9,10,12,13,14,15,16),1]) # tout sauf C, D, C*D # tt <- emFrequencies(w, ~ A * B | C*D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*C | B*D # gA <- sum(w$results[c(2,4,6,7,8,9,11,12,13,14,15,16),1]) # tout sauf B, D, B*D # tt <- emFrequencies(w, ~ A * C | B*D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of A*D | B*C # gA <- sum(w$results[c(2,5,6,7,8,10,11,12,13,14,15,16),1]) # tout sauf B, C, B*C # tt <- emFrequencies(w, ~ A * D | B*C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*C | A*D # gA <- sum(w$results[c(3,4,6,7,9,10,11,12,13,14,15,16),1]) # tout sauf A, D, A*D # tt <- emFrequencies(w, ~ B * C | A*D ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of B*D | A*C # gA <- sum(w$results[c(3,5,6,8,9,10,11,12,13,14,15,16),1]) # tout sauf A, C, A*C # tt <- emFrequencies(w, ~ B * D | A*C ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # # decomposition of C*D | A*B # gA <- sum(w$results[c(4,5,7,8,9,10,11,12,13,14,15,16),1]) # tout sauf A, B, A*B # tt <- emFrequencies(w, ~ C * D | A*B ) # gB <- sum(tt$results[,1]) # expect_equal(gA, gB, tolerance = 0.0001) # #·························································· # # 3 factors within 1 factor # #·························································· # # testing A*B*C|D, A*B*D|C, A*C*D|B, B*C*D|A # # of A*B*C*D design # #·························································· # ## Coding third-order simple effects has been postpone until some interest is shown... # })