* using log directory 'd:/RCompile/CRANincoming/R-devel/AMR.Rcheck'
* using R Under development (unstable) (2026-10-14 r90673 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.3.0
    GNU Fortran (GCC) 14.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* current time: 2026-10-16 10:10:40 UTC
* checking for file 'AMR/DESCRIPTION' ... OK
* this is package 'AMR' version '3.1.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [134s] NOTE
Maintainer: 'Matthijs S. Berends <m.s.berends@umcg.nl>'

Found the following (possibly) invalid URLs:
  URL: https://www.who.int/publications/i/item/9789241548809
    From: man/mdro.Rd
    Status: Error
    Message: Timeout was reached [www.who.int]:
      Operation timed out after 60005 milliseconds with 0 bytes received
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'AMR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... WARNING
Output(s) listed in 'build/vignette.rds' but not in package:
  'inst/doc/AMR_for_Python.html'
  'inst/doc/welcome_to_AMR.html'
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [45s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking relative paths in package URLs ... NOTE
Checking relative paths failed with message:
  error in inferior call:
  Failed to locate 'weave' output file 'AMR_for_Python.pdf' or 'AMR_for_Python.html' for vignette with name 'AMR_for_Python' and engine 'knitr::rmarkdown'. The following files exist in working directory 'D:\RCompile\CRANincoming\R-devel\lib\AMR\doc': 'AMR_for_Python.R' (199 bytes), 'AMR_for_Python.Rmd' (11535 bytes), 'index.html' (1872 bytes), 'welcome_to_AMR.R' (199 bytes), 'welcome_to_AMR.Rmd' (7677 bytes)
* checking examples ... [41s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... OK
  Running 'testthat.R'
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... WARNING
Failed to locate 'weave' output file 'AMR_for_Python.pdf' or 'AMR_for_Python.html' for vignette with name 'AMR_for_Python' and engine 'knitr::rmarkdown'. The following files exist in working directory 'D:\RCompile\CRANincoming\R-devel\AMR.Rcheck\00_pkg_src\AMR\inst\doc': 'AMR_for_Python.R' (199 bytes), 'AMR_for_Python.Rmd' (11535 bytes), 'welcome_to_AMR.R' (199 bytes), 'welcome_to_AMR.Rmd' (7677 bytes)Failed to locate 'weave' output file 'welcome_to_AMR.pdf' or 'welcome_to_AMR.html' for vignette with name 'welcome_to_AMR' and engine 'knitr::rmarkdown'. The following files exist in working directory 'D:\RCompile\CRANincoming\R-devel\AMR.Rcheck\00_pkg_src\AMR\inst\doc': 'AMR_for_Python.R' (199 bytes), 'AMR_for_Python.Rmd' (11535 bytes), 'welcome_to_AMR.R' (199 bytes), 'welcome_to_AMR.Rmd' (7677 bytes)
Package vignettes without corresponding single PDF/HTML:
  'AMR_for_Python.Rmd'
  'welcome_to_AMR.Rmd'
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [19s] OK
* checking HTML version of manual ... OK
* DONE
Status: 2 WARNINGs, 2 NOTEs