* using log directory 'd:/RCompile/CRANincoming/R-devel/AMR.Rcheck'
* using R Under development (unstable) (2025-05-30 r88253 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 14.2.0
    GNU Fortran (GCC) 14.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* checking for file 'AMR/DESCRIPTION' ... OK
* this is package 'AMR' version '3.0.0'
* package encoding: UTF-8
* checking CRAN incoming feasibility ... [21s] NOTE
Maintainer: 'Matthijs S. Berends <m.s.berends@umcg.nl>'

Found the following (possibly) invalid URLs:
  URL: http://www.biostathandbook.com/gtestgof.html
    From: man/g.test.Rd
    Status: 406
    Message: Not Acceptable

Found the following (possibly) invalid DOIs:
  DOI: 10.1001.jamanetworkopen.2019.21124
    From: man/antibiogram.Rd
          man/antibiogram.Rd
    Message: Invalid DOI
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking serialization versions ... OK
* checking whether package 'AMR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking whether startup messages can be suppressed ... OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [53s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ... [75s] OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ... ERROR
  Running 'testthat.R'
Running the tests in 'tests/testthat.R' failed.
Complete output:
  > # ==================================================================== #
  > # TITLE:                                                               #
  > # AMR: An R Package for Working with Antimicrobial Resistance Data     #
  > #                                                                      #
  > # SOURCE CODE:                                                         #
  > # https://github.com/msberends/AMR                                     #
  > #                                                                      #
  > # PLEASE CITE THIS SOFTWARE AS:                                        #
  > # Berends MS, Luz CF, Friedrich AW, et al. (2022).                     #
  > # AMR: An R Package for Working with Antimicrobial Resistance Data.    #
  > # Journal of Statistical Software, 104(3), 1-31.                       #
  > # https://doi.org/10.18637/jss.v104.i03                                #
  > #                                                                      #
  > # Developed at the University of Groningen and the University Medical  #
  > # Center Groningen in The Netherlands, in collaboration with many      #
  > # colleagues from around the world, see our website.                   #
  > #                                                                      #
  > # This R package is free software; you can freely use and distribute   #
  > # it for both personal and commercial purposes under the terms of the  #
  > # GNU General Public License version 2.0 (GNU GPL-2), as published by  #
  > # the Free Software Foundation.                                        #
  > # We created this package for both routine data analysis and academic  #
  > # research and it was publicly released in the hope that it will be    #
  > # useful, but it comes WITHOUT ANY WARRANTY OR LIABILITY.              #
  > #                                                                      #
  > # Visit our website for the full manual and a complete tutorial about  #
  > # how to conduct AMR data analysis: https://amr-for-r.org              #
  > # ==================================================================== #
  > 
  > library(testthat)
  > library(AMR)
  > 
  > test_check("AMR")
  Error in `test_dir()`:
  ! No test files found
  Backtrace:
      ▆
   1. └─testthat::test_check("AMR")
   2.   └─testthat::test_dir("testthat", package = package, reporter = reporter, ..., load_package = "installed")
   3.     └─rlang::abort("No test files found")
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... [30s] OK
* checking HTML version of manual ... [18s] OK
* DONE
Status: 1 ERROR, 1 NOTE