* installing *source* package ‘AMISforInfectiousDiseases’ ...
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c RcppExports.cpp -o RcppExports.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c calc_log_norm_const_gaussian.cpp -o calc_log_norm_const_gaussian.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c compute_weight_matrix_empirical_gauss.cpp -o compute_weight_matrix_empirical_gauss.o	
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c compute_weight_matrix_empirical_histogram.cpp -o compute_weight_matrix_empirical_histogram.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c compute_weight_matrix_empirical_uniform.cpp -o compute_weight_matrix_empirical_uniform.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c compute_weight_matrix_without_g.cpp -o compute_weight_matrix_without_g.o	
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c f_estimator_gaussian.cpp -o f_estimator_gaussian.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c f_estimator_histogram.cpp -o f_estimator_histogram.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c f_estimator_uniform.cpp -o f_estimator_uniform.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c f_user_defined.cpp -o f_user_defined.o
clang++-19  -std=gnu++17 -I"/home/hornik/tmp/R/include" -DNDEBUG  -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/Rcpp/include' -I'/home/hornik/lib/R/Library/4.5/x86_64-linux-gnu/RcppArmadillo/include' -I/usr/local/include -DUSE_TYPE_CHECKING_STRICT -D_FORTIFY_SOURCE=3    -fpic  -g -O3 -Wall -pedantic -DR_NO_REMAP -g0 -O3 -c get_which_valid_prev_map.cpp -o get_which_valid_prev_map.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R/lib -Wl,-O1 -o AMISforInfectiousDiseases.so RcppExports.o calc_log_norm_const_gaussian.o compute_weight_matrix_empirical_gauss.o compute_weight_matrix_empirical_histogram.o compute_weight_matrix_empirical_uniform.o compute_weight_matrix_without_g.o f_estimator_gaussian.o f_estimator_histogram.o f_estimator_uniform.o f_user_defined.o get_which_valid_prev_map.o -llapack -L/home/hornik/tmp/R/lib -lRblas -L/usr/lib/llvm-19/lib -lFortranRuntime -lFortranDecimal -lm -L/home/hornik/tmp/R/lib -lR
installing to /srv/hornik/tmp/CRAN_pretest/AMISforInfectiousDiseases.Rcheck/00LOCK-AMISforInfectiousDiseases/00new/AMISforInfectiousDiseases/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (AMISforInfectiousDiseases)